Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0759.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.16 
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    25   0.48 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   0.85 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   6.0  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   7.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 237  PSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAY 350
            P STT Y   Q T+  P  P  + +PP+    +  S Y
Sbjct: 1360 PGSTTNYPEWQPTEWHPPIPPTSEKPPLPEELKPQSGY 1397



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 163  PFSACTEMLSALYGPPC 113
            P+SAC+E   A Y   C
Sbjct: 1275 PYSACSENAFAAYPGDC 1291


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 566 YALLVVELVGCACLVYIYNCW 504
           Y + V+  +GC C+  I+N W
Sbjct: 44  YTIGVIITIGCLCIWSIFNKW 64


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +3

Query: 288 TTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 392
           TTPRW        +T     Y        P PR P
Sbjct: 51  TTPRWGCARASSATTMGGPRYGRAAAQGMPYPRFP 85


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 25/74 (33%), Positives = 31/74 (41%)
 Frame = +3

Query: 285 PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAA 464
           PT P   A   + P T A +AY N       A  A AQ + R  +     T   G   A+
Sbjct: 127 PTLPAAAAAALLPPQTAAMAAYLN-----AAAVAAAAQQSHRLMM-----TSPSGFNRAS 176

Query: 465 ASIRPPLVSQSSRP 506
            S   PL+S SS P
Sbjct: 177 VS---PLISSSSSP 187


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = +3

Query: 264 AQMTQIRPTTPRWNAQPP---VRPSTQAAS 344
           A+   + PTTP   + PP   + PS  A+S
Sbjct: 88  AEKVSVSPTTPPTPSPPPEERLTPSKDASS 117


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 102 CNIQWFSSYNTSIH 61
           CN Q+  SYN  IH
Sbjct: 85  CNRQFTKSYNLLIH 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,476
Number of Sequences: 336
Number of extensions: 3476
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)