Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0759.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 74 2e-14
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 53 4e-08
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 46 4e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 43 3e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 36 0.003
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.004
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.024
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.042
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 33 0.042
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.097
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 29 0.39
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.52
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 29 0.52
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.68
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 1.2
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 28 1.2
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 1.6
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.1
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.1
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 27 2.1
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 27 2.7
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 3.6
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 26 3.6
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 26 3.6
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 3.6
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 26 4.8
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 8.4
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 8.4
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 8.4
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 73.7 bits (173), Expect = 2e-14
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
KGFGFVC+++PEEA KAVTEMN R++ KPLYVALAQRKE R++ L
Sbjct: 404 KGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQL 449
Score = 42.7 bits (96), Expect = 4e-05
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
+GFGFV +++ E A KAV E+N + K LYV AQ+K +R+ L
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEEL 346
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 132
KG+GFV F S E A A+ +NG ++ K +YV + +R++
Sbjct: 208 KGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQS 251
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLT 141
KG+GFV FS P EA +A+ +NG + G K L+V A+++EDRK L+
Sbjct: 462 KGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRKKRLS 508
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 46.0 bits (104), Expect = 4e-06
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
KG+GFV F E A +A +NG +VG K ++V A+RK DR
Sbjct: 425 KGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDR 466
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 43.2 bits (97), Expect = 3e-05
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
+GFGFV F++ E+ ++A+ EMNG+ VG L V A +ED++
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQ 300
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
G FV F++ E+ KA+ +NG+ + + + V A+ +++
Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQ 130
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
KG+GFV + S E A A+ MN + + KP+ V+ A ++E +
Sbjct: 140 KGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGK 181
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 35.9 bits (79), Expect = 0.004
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 108
+GFGFV F ++ KA E NG+ +G++P+ ++ A
Sbjct: 70 RGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRA 105
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 114
+GFGF+ FS+ EEAT A+ +N + + L V A+R
Sbjct: 142 RGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKR 179
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 32.7 bits (71), Expect = 0.042
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKP 90
KGFG+V FS + A K V EMNG + +P
Sbjct: 407 KGFGYVTFSDIDSAKKCV-EMNGHFIAGRP 435
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVT-----EMNGRIV 78
KG+G+V F +PE A AV E++GR+V
Sbjct: 304 KGYGYVDFETPEAAKAAVAANGTKEIDGRMV 334
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 32.7 bits (71), Expect = 0.042
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 102
KG GFV +S A KA+ M G +VGT + +A
Sbjct: 332 KGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLA 365
Score = 30.3 bits (65), Expect = 0.22
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 7 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
+GFV FSS +E A+ M G + +PL +++A K
Sbjct: 226 YGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.5 bits (68), Expect = 0.097
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 108
KGFG V F + +A ++ ++NG G +PL ++ A
Sbjct: 320 KGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 29.5 bits (63), Expect = 0.39
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 240 SSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP---TYRPAPRAPAQSTIR 410
S + PA + P ++ P P + AASAY++ P R P APA ++
Sbjct: 211 SKNLVLDPASPKSVSPDLVYVSSDNP--PVSTAASAYSSSLPISDVTRALPLAPASNSQH 268
Query: 411 TSLGARPIT 437
SL ++P++
Sbjct: 269 PSLSSQPVS 277
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.1 bits (62), Expect = 0.52
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
KGFG++ + +P A A+ +MNG + + + V L K
Sbjct: 380 KGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +3
Query: 480 PLVSQSSRPAIINIHQTCATH-QLHNQQCISKDKEPS 587
PL SQ+SR AI+N +++CAT + +N+ + + PS
Sbjct: 563 PLASQASR-AILNAYKSCATSPKENNEDSLPLQRSPS 598
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.7 bits (61), Expect = 0.68
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
GFGFV F A A+ MNG ++ L + L+ + D A +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEV 710
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 7 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYV--ALAQRKEDRK 129
F F+ F + E+A KA+ +N V T + V AL R + K
Sbjct: 48 FAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRALDYRSANEK 90
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 99
KG+GF + P A AV +N GT+ L V
Sbjct: 46 KGYGFCEYHDPATAASAVRNLNNYDAGTRRLRV 78
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 149 TCREWLVCACSKWAKYSSLVVQVDFLYHRSLQH 247
T + +C C + ++ ++VQV LY ++L H
Sbjct: 288 TYENYYLCECDAFFLFTQMMVQVRDLYEKTLDH 320
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 93
KGFGF+ F S + A A+ +NGR + K +
Sbjct: 539 KGFGFMQFISHKYALMALRWLNGREITVKKI 569
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 120
GF FV + A +A+ +NG + +P+ V A K+
Sbjct: 149 GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKD 187
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 120
KGFG+V ++ ++A A++ G+ +G + L V L++ +E
Sbjct: 796 KGFGYVVMTTNQDAENALSAA-GKQLGNRVLNVVLSKPRE 834
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = +3
Query: 291 TPRWNAQPPVRPSTQAASAYANMQPTYRPAP---RAPAQSTIRTSLGA--RPITGQQGVA 455
TP + PP+ PS ++ + PAP P+ T+ + + RPI
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Query: 456 AAAASIRPPLVSQSSR 503
A ++ +PPL SSR
Sbjct: 283 AINSTSKPPLPPPSSR 298
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 285 PTTPRWNAQPPVRPSTQAASAYANMQPTY--RPAPRAPAQS 401
P TP +PP ST++ ++M +Y P+P +P+ +
Sbjct: 276 PATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSSPSDA 316
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 309 QPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPI 434
QP + P Q + T++P PR P Q + T RP+
Sbjct: 700 QPTLHPQGQLPIQNVEQRATHKPLPRPPVQ--VETREPVRPV 739
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 422 CKTHNWTARSCCCCCIYSSTFSISKQSPSNYKYTPNMRNPPAPQPAVHIQGQ 577
CKT + C+ ++S +S S+Y ++RN PA A QG+
Sbjct: 5 CKTTYSSRLKTGNTCLIQKNVAVSTRSHSSYTGRNSLRNVPAVNYAAFEQGE 56
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 467 IYSSTFSISKQSPSNYKYTPNMRNPPAPQPAV 562
++ S+ +S + P ++ + P+M+ P QPAV
Sbjct: 323 LFDSSDYVSVRRPDDFSFIPSMQGPFLLQPAV 354
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 348 YANMQPTYRPAPRAPAQSTIRTSLGARP-ITGQQGVAAAAASI 473
Y QP+Y P P+ +T+ + L P +T G + A+SI
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTVSSGPLSTASSI 313
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 312 PPVRPSTQAASAYANMQPTYRP 377
P VRP+ +AAS+Y +P++ P
Sbjct: 134 PKVRPARRAASSYVPSRPSHVP 155
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 3.6
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +3
Query: 231 IAPSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST-- 404
++ +S + A +RP + A+ P R + + + RP +S
Sbjct: 309 VSATSNSTVRVASSLAVRPVSRNAQARTPSRLEQREVNVKNSSAKIVRPGTSLGVRSPSR 368
Query: 405 IRTSLGARPITGQQGVAAAAASIRPPLVSQSSRP 506
I+++L +R TG V AA+I P S + RP
Sbjct: 369 IQSTLSSRTTTGN--VRTKAANIVRPSSSINRRP 400
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 327 STQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRP 506
+T A+A Q + P P P + + P+ AAAA + PP + ++ P
Sbjct: 351 TTTEAAAAQYPQAAFPPPPVMPQPAAAAVTT---PVAAPVAAAAAAVPVPPPAPAPAAAP 407
Query: 507 A 509
A
Sbjct: 408 A 408
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNG 69
+G F F SPEEA V +NG
Sbjct: 273 RGLAFANFHSPEEAKTVVQVLNG 295
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 8.4
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Frame = +3
Query: 273 TQIRPTT--PRWNAQPPVRPSTQAASAYANMQPTYRPAP-RAPAQSTIRTSLGARPITGQ 443
T P T P + A+P R ++ + M YRP P P TS P
Sbjct: 71 TNFYPLTAPPPYTAEPEARYNSTIHNPMPPMSQAYRPPPTEPPTVPAYETSSEFPPPAYP 130
Query: 444 QGVAAAAASIR 476
+ A + A+ R
Sbjct: 131 EAAATSDAAFR 141
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +2
Query: 170 CACSKWAKYSSLVVQVDFLYHRSLQHHVIWTSSNDSNKTYNSKVE 304
CA W + ++D LYH ++ + +S +D++ T + + E
Sbjct: 422 CAGKVWVFHGCRDQELDELYHGEWENPLQKSSDDDASSTVSQQTE 466
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 121 PPCVELVQHTMV*FLQYVHSS 59
PP +E +Q T + LQYVH +
Sbjct: 732 PPQLENIQGTTIQLLQYVHDN 752
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,756
Number of Sequences: 5004
Number of extensions: 52786
Number of successful extensions: 229
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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