Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0759.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 87 1e-17
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 40 0.002
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 37 0.011
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.011
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.033
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 35 0.043
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.043
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 34 0.076
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8) 34 0.076
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.076
SB_38839| Best HMM Match : HicB (HMM E-Value=5.7) 33 0.23
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 32 0.31
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.53
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.71
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 31 0.93
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 31 0.93
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2) 30 1.2
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 30 1.2
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 30 1.6
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058) 30 1.6
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3) 29 2.2
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59) 29 2.2
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 29 2.9
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 28 5.0
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 28 5.0
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 28 5.0
SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 28 5.0
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 5.0
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09) 28 6.6
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 28 6.6
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11) 28 6.6
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_41641| Best HMM Match : PT (HMM E-Value=3.1) 28 6.6
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024) 28 6.6
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 28 6.6
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 28 6.6
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 27 8.7
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 27 8.7
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 27 8.7
SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/46 (86%), Positives = 44/46 (95%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
KGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQR+E+RKA L
Sbjct: 252 KGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRREERKAQL 297
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
KGFGFV F +PEEA +AV +NG+ +G + L+ A+++ +R A +
Sbjct: 149 KGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEV 194
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 132
+GFGFV F S EE KA+ E +G+ +P+ V AQ + +R A
Sbjct: 45 RGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQAQPRGERGA 88
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 111
GFGFV +++ E+A KA+ ++NG +G K L VA ++
Sbjct: 89 GFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSR 124
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 93
KGF FV ++ EEA A+ +NG + KPL
Sbjct: 316 KGFCFVTMATQEEAQNAIQTLNGFMYTNKPL 346
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 102
+GFGFV F++PE+A AV +NG+ V + L +A
Sbjct: 99 RGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIA 132
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 123
KGFGFV F E+A KA+ EM+ +G K + A RK +
Sbjct: 554 KGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 123
+GFGFV F S EE KA+ E +G+ + +P+ V A+ + D
Sbjct: 137 RGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGD 177
>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1240
Score = 37.1 bits (82), Expect = 0.011
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Frame = +3
Query: 261 PAQMTQIRPTTPRWNAQPPVRPSTQAAS-AYANMQPTYRPA-----PRAPAQSTIRTSLG 422
P Q T+ T A P ST++++ A PT+ P+ P P T +
Sbjct: 835 PVQTTESYNTPTETTALPYQETSTESSTTAQPTQPPTFAPSIAPTQPPTPKPPTTEPNFD 894
Query: 423 ARPITGQQ-GVAAAAASIRPPLVSQSSRPAIINIHQTCATHQLHNQ-QCISKDKEP 584
+ GQQ VA A + P+V S PA+ N+ T Q Q +SK ++P
Sbjct: 895 IKVDFGQQQSVANAGGDLLKPVVPSPSNPALPNLGDTFMNTASSTQIQEVSKVEKP 950
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
+GFGFV F S +E KA+ + +G + +P+ V AQ + +R
Sbjct: 50 RGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGER 91
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 111
G+ FV + +P++A KAV EMNG + K L V+ A+
Sbjct: 69 GYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFAR 104
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
KGF F+ F+S + + A+ MNG+ + +P+ V+ A +KE +
Sbjct: 142 KGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKESK 183
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
+GFGFV F++ EA KA ++NG IV + + V+L +
Sbjct: 124 EGFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQ 162
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 135
KG+GFV F E A +A+ +MNG + +PL + + D A+
Sbjct: 283 KGYGFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTERGDSSAY 327
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 34.3 bits (75), Expect = 0.076
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 123
G GFV F PE A KA E++G + + L++ A+ K++
Sbjct: 283 GIGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPAKAKKE 322
>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
Length = 922
Score = 34.3 bits (75), Expect = 0.076
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +3
Query: 309 QPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLV 488
+PP TQA +A T P PR+P +S+ RP +G++ +A+S RP V
Sbjct: 751 RPPSSQKTQANTASQASVDTASPLPRSPKRSSPILPPINRPASGRKS-TTSASSARP--V 807
Query: 489 SQSSRPAIINI 521
S+ S P + +I
Sbjct: 808 SRCSLPGVSSI 818
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 34.3 bits (75), Expect = 0.076
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
+GFGFV S ++ A+ +MN VG + + VALA K + +
Sbjct: 49 RGFGFVLLQSADQIAPAIEKMNQSSVGGRNITVALALDKTENR 91
>SB_38839| Best HMM Match : HicB (HMM E-Value=5.7)
Length = 268
Score = 32.7 bits (71), Expect = 0.23
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +3
Query: 321 RPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGAR-----PITGQQGVAAAAASIRPPL 485
RPS AAS N R A R+ A ++RT AR PI G + + P
Sbjct: 21 RPSLVAASPVVNEVSAVRCASRSHAMRSMRTRRRARHWDRLPIAGVKRDKGRRLVVPRPA 80
Query: 486 VSQSSRPAIINIHQTCAT 539
+ +R I+N++ TC T
Sbjct: 81 IGGRTRQGIVNVN-TCLT 97
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 32.7 bits (71), Expect = 0.23
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +3
Query: 228 TIAPSSTTLYGPAQMTQIRPT-TPRWNAQPPVRPSTQAA-SAYANMQPTYRPAPRAPAQS 401
++A S+ A TQ P+ TP P V PSTQAA SA ++ Q AP
Sbjct: 1905 SVASSTQVTPSVASSTQAAPSVTPSTLMTPSVTPSTQAAPSAASSTQVAPSMAPSTQTGH 1964
Query: 402 TIRTSLGARPITGQ-QGVAAAAASIRPP 482
++ S A P VA + + PP
Sbjct: 1965 SVTPSTQAGPSAASCSQVAQSIVATAPP 1992
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 135
K FGFV + + A A+ MNG +G K L V L + K+ + +
Sbjct: 303 KCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDANRPY 347
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 135
K FGFV + + A A+ MNG +G K L V L + K+ + +
Sbjct: 318 KCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDANRPY 362
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 31.9 bits (69), Expect = 0.40
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 261 PAQMTQIRPTTPRWNAQPPVRPSTQAASAY---ANMQPTYRPAPRAPAQSTIRTSLGARP 431
PA T T + AQ PV P+ A+AY A + PT PA PAQS + A P
Sbjct: 1318 PANPTAAPATA--YPAQAPVNPTAAPATAYPAQAPVNPTAAPATAYPAQSPFNPT--AAP 1373
Query: 432 ITGQQGVAAA 461
T A A
Sbjct: 1374 ATAYPAQAPA 1383
Score = 30.7 bits (66), Expect = 0.93
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +3
Query: 228 TIAPSSTTLYGPAQMTQIRPTTP---RWNAQPPVRPSTQAASAY---ANMQPTYRPAPRA 389
T AP+ T Y PAQ + PT + AQ PV P+ A+AY + PT PA
Sbjct: 1322 TAAPA--TAY-PAQ-APVNPTAAPATAYPAQAPVNPTAAPATAYPAQSPFNPTAAPATAY 1377
Query: 390 PAQSTIRTSLG 422
PAQ+ + G
Sbjct: 1378 PAQAPANPTAG 1388
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
GFGFV F++ +A KA+ EMN + + +P+ V A K
Sbjct: 291 GFGFVQFTNVFDAAKALEEMNAKKILGRPVAVDWAVPK 328
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
+GFG+V F+ E+A KA + N + + +P+++ +++K K
Sbjct: 62 RGFGYVTFALEEDALKA--KDNIKSIKGRPIHLDFSEKKARTK 102
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 10 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
GFV F + E A KA+ EMNG V + V++A+R+
Sbjct: 146 GFVTFDTWEAADKAIDEMNGLKVQHVHIRVSMARRQ 181
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 99
KGF FV + PE A A+ +MNG ++G + + V
Sbjct: 143 KGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 7 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 123
FGFV F + + A +AV + +GRI+ K + V + + D
Sbjct: 82 FGFVQFETEKGADEAVAKEHGRIINGKKIDVRIVNSRAD 120
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMN 66
KG+GFV F P + KA+ EMN
Sbjct: 258 KGYGFVSFKDPNDFIKAMREMN 279
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 30.3 bits (65), Expect = 1.2
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +3
Query: 240 SSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSL 419
S+ + GP Q TQ + TT + +QP T A++ A P P PA +TI +
Sbjct: 277 STPEVPGPTQPTQTKKTTTKPVSQP---GETTASTPKA-------PGPTQPASTTIEAT- 325
Query: 420 GARPITGQQGVAAAAASIRPPLVSQS-SRPAI 512
+P T A A P VSQS S P I
Sbjct: 326 -PQPETQPGASTAKAPGSTEPTVSQSASSPKI 356
>SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2)
Length = 415
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 288 TTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 416
TT +++PP P T A +++N Q + AP APAQ R+S
Sbjct: 151 TTTSQDSRPPSYPETGARVSHSNEQ-VWPLAPTAPAQQDPRSS 192
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 30.3 bits (65), Expect = 1.2
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Frame = +3
Query: 219 IFCTIAPSSTTLYGPA--QMTQIRPTTPRWNAQPPVRPSTQA--ASAY----ANMQPTYR 374
++ TIA +STT P+ + T T NA P + PS +S Y N PT
Sbjct: 19 VYETIAVNSTTSISPSLNETTSSAYKTIAVNATPTISPSPNGTTSSMYETIAVNATPTIS 78
Query: 375 PAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPAIINIHQTCATH 542
P+P +S T L T A + +S S I ++++T A +
Sbjct: 79 PSPNRTTRSVYET-LPVSATTSSSTYETIAVN-ATTTISPSPNGTISSVYETLAVN 132
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Frame = +3
Query: 228 TIAPSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 407
TI+PS T +TP + P S+ + N PT P+P S
Sbjct: 546 TISPSPNETTSSVYETIAVNSTPSISPSPNGTTSSVYETIAVNATPTISPSPNGTTSSVY 605
Query: 408 RT-SLGARPITG------QQGVAAAAASIRPPLVSQSSRPAIINIHQTCATH 542
T ++ A PI V A P++S S ++++T A +
Sbjct: 606 ETIAVNATPIISPSPNGTTSSVYETIAVNATPIISPSPNGTTSSVYETIAVN 657
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Frame = +3
Query: 249 TLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGAR 428
T Y A + ++ A P + +A A Q PAP A A + + +
Sbjct: 55 TAYNAAARSTAPSSSNTGTAAAPAQAFAPSAPLAAPAQVAAAPAPAAAAPAPVPAAAAPA 114
Query: 429 PITGQQGVAAAAASIRP-PLVSQSS 500
P AAA A +R P S SS
Sbjct: 115 PAPAAPSAAAAPAPVRSVPSTSPSS 139
>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
Length = 339
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +3
Query: 309 QPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLV 488
QPPV P++ S + P P P S TS +T Q V +A + +PP++
Sbjct: 50 QPPVIPASSQPSHVGHFSTKSCPLPLNPVMSA--TSHPVMSVTSQPPVMSATS--QPPVM 105
Query: 489 SQSSRPAII 515
S+P ++
Sbjct: 106 FAISQPPVM 114
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 261 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARP 431
P Q +Q +P P Q P RP Q + ++QP +P RA Q+ G +P
Sbjct: 492 PDQQSQ-KPFRPEQQPQQPFRPGQQPQQPFRSVQPPQQPF-RADQQTQQPFQSGQQP 546
Score = 28.7 bits (61), Expect = 3.8
Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Frame = +3
Query: 255 YGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPI 434
+ P Q Q +P+ P Q P RP Q + ++QP +P G +P
Sbjct: 580 FRPGQQPQ-QPSRPGQQHQQPFRPEQQPQQPFRSVQPPQQPFRADQQTQQPFHQPGQQPQ 638
Query: 435 TGQQGVAAAAASIRPPLVS-QSSRPAIINIHQTCATHQLHNQQ 560
+ RP S QSSRP Q C L +QQ
Sbjct: 639 QSFRPGQQPQQPFRPEQQSQQSSRPG-----QQCQPQFLPDQQ 676
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.5 bits (63), Expect = 2.2
Identities = 26/108 (24%), Positives = 44/108 (40%)
Frame = +2
Query: 164 LVCACSKWAKYSSLVVQVDFLYHRSLQHHVIWTSSNDSNKTYNSKVECTAPCKA*HTSSI 343
L+ S++ + SL +YH + H + + S + C T++I
Sbjct: 417 LIAGVSQYLQQPSLAAMQ--VYHNTYNSHRLLLIAGVSQYLQQPSLAAYCRCITILTTAI 474
Query: 344 CICKYATHLQTSTESSGPIYNKNIVRCKTHNWTARSCCCCCIYSSTFS 487
C YA+ Q + S Y RC T TA +CC +Y +T++
Sbjct: 475 ACC-YASVSQHLQQPSLAAY----CRCITILTTAIACCLLQVYHNTYN 517
>SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)
Length = 138
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -3
Query: 431 GSCT*RCSYCRLGRSSRCWSVSGLHICICRCCLCARPYRGLCIPPWSCRSYLSHLS 264
G C RC CR+ R C + + C+ RC C C+ + C HLS
Sbjct: 53 GCCVMRCVACRVMRCVACCVMRCVACCVMRCVDC-------CVVTFCCYPSGRHLS 101
>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
Length = 218
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -3
Query: 431 GSCT*RCSYCRLGRSSRCWSVSGLHICICRCCLCARPYRGLCIPPWSCRSYLSHLS 264
G C RC CR+ R C + + C+ RC C C+ + C HLS
Sbjct: 133 GCCVMRCVACRVMRCVACCVMRCVACCVMRCVDC-------CVVTFCCYPSGRHLS 181
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 120
+GFGFV F S A KA + ++ K + V AQ KE
Sbjct: 12 RGFGFVTFESENSADKA-CDTQYHLINNKKVEVKKAQPKE 50
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 261 PAQMTQIRPTT--PRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPI 434
P Q+ + P+T P+ A P R A A PTYR +AP ++T R L P
Sbjct: 1735 PQQVGRGHPSTREPQRTAPTP-RTQQPPARAPPAQPPTYRNPAQAPFEATPREHLPKAPQ 1793
Query: 435 TGQQG 449
QG
Sbjct: 1794 ASGQG 1798
>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1933
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 365 GLHICICRCCLCARPYRGLCIPPWSCRSYLSHLSW 261
GL +C L A P W R+Y SH+SW
Sbjct: 1366 GLQLCAFEIGLFALGLHNRTSPNWLSRTYSSHVSW 1400
>SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = -3
Query: 353 CICRC---CLCARPYRGLCIPPW 294
C+CRC CLCA Y + +PP+
Sbjct: 16 CLCRCLCRCLCADVYVPMSMPPY 38
>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 756
Score = 28.3 bits (60), Expect = 5.0
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +2
Query: 257 WTSSNDSNKTYNSKVECTAPCKA*HTSSICICKYAT--HLQTSTESSGPIYNKNIVRCKT 430
+TSS +S K S + C S C CK + H+++S ES N+N C
Sbjct: 251 YTSSGESPKY--SDYDPRQTCPDIKCSPDCYCKIYSDEHVRSSKESQKFYDNENRQTCAG 308
Query: 431 HNWTARSCCCCCIYSSTFS 487
T CC C S S
Sbjct: 309 TGCTQGCCCKNCSNKSNSS 327
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
+ +GFV F+ E A +A+ +NG + L V+LA + R
Sbjct: 35 RDYGFVYFAKRESAVQAIDGINGAYIDGCKLEVSLAIPQSSR 76
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Frame = +3
Query: 228 TIAPSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 407
T P +TT + T TTPR P A+ A + T+ AP ST
Sbjct: 193 TTTPRTTT----PETTTPETTTPRTTTPETTTPKKTTAAKKAPLPVTHATTSHAP--STT 246
Query: 408 RTSLGARPITGQ-QGVAAAAASIRPP 482
ARP T + G A + S+ P
Sbjct: 247 ENPTTARPATTKAPGAARVSLSLLTP 272
>SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 28.3 bits (60), Expect = 5.0
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = +3
Query: 240 SSTTLYGPAQMT--QIRP--TTPRWNAQPPVRPSTQAA-SAYANMQPTYR--PAPRAPAQ 398
S+ P Q T QI P +TP A PS QA + + Q Y+ P+ RAP Q
Sbjct: 258 STPAQQAPYQSTPSQIAPYQSTPSQQAPYQSTPSQQAPYQSTPSQQAPYQSTPSQRAPYQ 317
Query: 399 STIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPA 509
ST + QQ + S R P S S+ A
Sbjct: 318 STPSQRAPYQSTPSQQASYQSTPSQRAPYQSTPSQQA 354
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 13 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
+V F E+A KAV ++N R +P+Y L+ + R+
Sbjct: 116 YVKFRYEEDAEKAVNDLNNRWYNGQPIYAELSPVTDFRR 154
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 28.3 bits (60), Expect = 5.0
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Frame = +3
Query: 243 STTLYGPAQMTQIRPTTPRWN-AQPPVRPSTQAASAYANMQPTYRP--APRAPAQSTIRT 413
S LY P +T +PR + PP RP T SA +P +P R ST
Sbjct: 613 SPRLYTPKSITPKFILSPRQTLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAF 672
Query: 414 SLGA-RPITGQQGVAAAAASIRP------PLVSQSSRPAI 512
+ A RP G A +P P+ + +RP++
Sbjct: 673 KIQAPRPKAGSDKPIAIKPRPKPKAGSYTPVAIRPNRPSV 712
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +3
Query: 258 GPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 368
G TQ+R TT QPP PS QA A PT
Sbjct: 1151 GNEHSTQVRNTTQAKPPQPPPVPSVQAPPAPPPAPPT 1187
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 5.0
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = +3
Query: 228 TIAPSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANM--QPTYRPAPRAPAQS 401
T A STT ++T+ T A P PST A M + T PA ++
Sbjct: 283 TPAEYSTTPSVQPELTEAPQTDYPTTASPATSPSTVAQERETTMAHEATAAPATTTAPET 342
Query: 402 TIRTSLGARPITGQQGVAAAAAS 470
T+ T P T + +AA S
Sbjct: 343 TVITETSVVPETLKTTMAAETTS 365
>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
Length = 765
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = +3
Query: 285 PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST-----IRTSLGARPITGQ 443
PT P + QPPV P T ++P +R +PR T +R+S P GQ
Sbjct: 460 PTDPNASLQPPVSPGT------VTVKPRHRSSPRCVTNKTPLAVQLRSSSTETPHPGQ 511
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGR-IVGTK 87
+G+GFV F +A AV ++NGR ++G +
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGER 751
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/91 (24%), Positives = 34/91 (37%)
Frame = +3
Query: 231 IAPSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIR 410
IA T L T PTTP + + +T ++ A +P +P+P Q+T
Sbjct: 1331 IAGPLTPLSTRPPTTTTVPTTPVATSTYSIVTTTGSSKAATEHRPVAKPSPSRKHQTTTW 1390
Query: 411 TSLGARPITGQQGVAAAAASIRPPLVSQSSR 503
QQ A + + P V +R
Sbjct: 1391 PQTTQEMAAVQQTTEAPSTTAPPTTVEDKTR 1421
>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
Length = 606
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +2
Query: 452 CCCCCIYSSTFSISKQSPS 508
CCCCC + F K P+
Sbjct: 513 CCCCCFFCFNFCCGKCKPN 531
>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 517 IYTKHAQPTSSTTSSAYPRTRNLLD 591
IY+ PTSS+++ P++RNL D
Sbjct: 491 IYSSDITPTSSSSADVEPKSRNLSD 515
>SB_41641| Best HMM Match : PT (HMM E-Value=3.1)
Length = 873
Score = 27.9 bits (59), Expect = 6.6
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +3
Query: 258 GPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP-APRAPAQSTIRTSL---GA 425
G A+ T++ P P A+P RP + A PT RP AP A+ T R GA
Sbjct: 579 GEAEPTKL-PQAPVGEAKPTKRPQSPVGGAV----PTKRPQAPVGEAEPTKRPQAPVGGA 633
Query: 426 RPITGQQGVAAAAASIRPPLVS 491
P Q A + P VS
Sbjct: 634 VPTKRPQAPVGEAEPTKRPQVS 655
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 359 HICICRCCLCARPYRGLCIPPWSCRS 282
++ CR R RGLC+PPW R+
Sbjct: 465 YVLSCRV-RTGRSIRGLCLPPWCSRA 489
>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
Length = 286
Score = 27.9 bits (59), Expect = 6.6
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Frame = +3
Query: 216 WIFCTIAPSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA-PRAP 392
W+ C P G A + + P P+T A + PT P P P
Sbjct: 89 WMPCNCPPDEDDSKGGAAGAEEKEEGEGGGDTPTTAPTTAATTPTT---PTTAPTTPTTP 145
Query: 393 AQS-TIRTSLGARPITGQQGVAA----AAASIRPPLVSQSSRPAII 515
+ T T+ P G AA AAA+ PP V + PA +
Sbjct: 146 TTAATTPTTAATTPAAGAAAAAAPPPAAAAAAPPPPVGKPVVPAAL 191
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 288 TTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARP 431
T+ A+PP RP A A + PT R P R G+ P
Sbjct: 584 TSTEGPARPPARPPPTAKPAVNRLSPTRRSLPPVATHQEDRYRPGSTP 631
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 261 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPA 395
P T I P++ + N+ PP PSTQ S + T P+ + P+
Sbjct: 254 PINPTPINPSSYQPNSHPPQLPSTQLPS--TQLPSTQLPSTQLPS 296
>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 678
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 225 CTIAPSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAY 350
C IAP S+T P T+ P R +A+P RP + A Y
Sbjct: 37 CMIAPLSSTQ--PRFSTEQLPVRQRLSARPRPRPDSPACMVY 76
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = +3
Query: 285 PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAA 464
PT+ + PP STQ S+ + QP + PA A S PIT + + A
Sbjct: 168 PTSAPPASAPPKAQSTQGMSSGTSEQPWFSPANTVTAFGAKLASSLFGPITNENSLFGGA 227
Query: 465 ASIRPPLVSQSSRPAIINI 521
+ L Q ++ +N+
Sbjct: 228 QPTQ--LFGQPTKVDTVNL 244
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 300 WNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRP 479
WNA+P RP+T + SA P P + A + +R SL A P + +A +R
Sbjct: 240 WNAEPTTRPTTVSISA---TDPIASLKPFSFA-TDLRPSLAAAPFVVSE--VSAVVCVRA 293
Query: 480 P 482
P
Sbjct: 294 P 294
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 309 QPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPIT 437
QPP P T A PT P + T+ ++PIT
Sbjct: 294 QPPTEPRTSTPGTPAKSTPTQSGPPLRRSTRTVNKKPSSQPIT 336
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 27.5 bits (58), Expect = 8.7
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = +3
Query: 240 SSTTLYGPAQMTQIRPTTPRWNAQPPVRPST-QAASAYANMQPTYRPAPRAPAQSTIRTS 416
+STT A Q R TT + PP R + +A +A A R + +PA +R+S
Sbjct: 133 TSTTATRRAGSAQGRLTTKK--KTPPRRTNLLEAFTAAAGTPAGSRRSSISPASPALRSS 190
Query: 417 LGARPITGQQGVAAAAASIRPPLVSQSSRPAIINIHQTCAT 539
LG+ T + + ++ R S++ P+ + T +T
Sbjct: 191 LGSLAPTSRTSTPTSRSTPRSRSRSRARTPSTPSTPSTPST 231
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEM 63
KG+GFV F SP A KAV +
Sbjct: 141 KGYGFVDFESPISAQKAVAAL 161
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +3
Query: 294 PRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASI 473
PR+ + S S A + +Y+P PR P+ S SL A P + + S
Sbjct: 249 PRYKPLLRILTSPSLVSLQAPLSYSYKPLPRIPS-SLCLLSLQAPPSYPYKPLPRIPTS- 306
Query: 474 RPPLVSQSSRPAII 515
P LVS +RP+ +
Sbjct: 307 -PSLVSLLARPSYL 319
>SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 926
Score = 27.5 bits (58), Expect = 8.7
Identities = 26/94 (27%), Positives = 40/94 (42%)
Frame = +3
Query: 315 PVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQ 494
PV+PST +A++ N+ + AP P TI S G G + RP ++
Sbjct: 732 PVQPSTSSAASRPNLSAS--SAPLEPLSITIPPSNITERAPG-YGPLSVMPVTRPLTIAI 788
Query: 495 SSRPAIINIHQTCATHQLHNQQCISKDKEPS*PL 596
S + + + AT+ H Q I + S PL
Sbjct: 789 PSSSCLSTVSEAEATNTRH--QSIDAYSQTSPPL 820
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,499,198
Number of Sequences: 59808
Number of extensions: 470981
Number of successful extensions: 1777
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1761
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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