Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0759.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 79 2e-15
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 79 2e-15
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 75 4e-14
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 67 1e-11
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 67 1e-11
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 66 1e-11
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 64 7e-11
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 54 1e-07
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 42 3e-04
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 42 4e-04
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 41 5e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 41 7e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 41 7e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 40 0.002
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 40 0.002
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 39 0.002
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 38 0.004
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 38 0.007
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 37 0.009
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 37 0.012
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 36 0.016
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 36 0.016
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 36 0.027
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 36 0.027
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 36 0.027
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 36 0.027
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 36 0.027
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 36 0.027
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 36 0.027
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 35 0.047
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 35 0.047
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 35 0.047
At3g08670.1 68416.m01007 expressed protein 35 0.047
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 35 0.047
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 35 0.047
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 34 0.063
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 34 0.083
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 33 0.11
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 33 0.11
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 33 0.14
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.14
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.14
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 33 0.19
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 33 0.19
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 32 0.25
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 32 0.33
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 32 0.33
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 32 0.33
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 32 0.33
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 32 0.33
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 32 0.33
At2g40070.1 68415.m04923 expressed protein 32 0.33
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 32 0.33
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 32 0.33
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 31 0.44
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 31 0.44
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 31 0.44
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 31 0.44
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 31 0.44
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 31 0.44
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 31 0.44
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 31 0.58
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 31 0.58
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 31 0.58
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family... 31 0.58
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 31 0.58
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 31 0.77
At2g32300.1 68415.m03949 uclacyanin I identical to uclacyanin I ... 31 0.77
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 31 0.77
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 31 0.77
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.77
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 31 0.77
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 30 1.0
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 30 1.0
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 30 1.0
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 30 1.0
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 30 1.0
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 30 1.0
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 26 1.2
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 30 1.3
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 30 1.3
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 30 1.3
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 29 1.8
At4g01280.1 68417.m00169 myb family transcription factor contain... 29 1.8
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 29 1.8
At1g10620.1 68414.m01204 protein kinase family protein contains ... 29 1.8
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 29 2.4
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 29 2.4
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 29 2.4
At4g29000.1 68417.m04145 tesmin/TSO1-like CXC domain-containing ... 29 2.4
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 2.4
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 2.4
At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4)... 29 2.4
At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4)... 29 2.4
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 29 3.1
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic... 29 3.1
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 29 3.1
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 3.1
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 29 3.1
At1g06760.1 68414.m00718 histone H1, putative similar to histone... 29 3.1
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 28 4.1
At3g25240.1 68416.m03153 hypothetical protein contains Pfam prof... 28 4.1
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 28 4.1
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 28 4.1
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 28 4.1
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 28 4.1
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 28 4.1
At1g01060.2 68414.m00007 myb family transcription factor contain... 28 4.1
At1g01060.1 68414.m00006 myb family transcription factor contain... 28 4.1
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 28 5.4
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 28 5.4
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 28 5.4
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 28 5.4
At3g06040.2 68416.m00691 ribosomal protein L12 family protein co... 28 5.4
At3g06040.1 68416.m00690 ribosomal protein L12 family protein co... 28 5.4
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 28 5.4
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 28 5.4
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 28 5.4
At2g31090.1 68415.m03797 expressed protein 28 5.4
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At2g05120.1 68415.m00539 expressed protein 28 5.4
At1g62210.1 68414.m07017 expressed protein 28 5.4
At1g47660.1 68414.m05295 hypothetical protein 28 5.4
At1g31250.1 68414.m03825 proline-rich family protein contains pr... 28 5.4
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 27 7.2
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 27 7.2
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 27 7.2
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 27 7.2
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 27 7.2
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 27 7.2
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 27 7.2
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 27 7.2
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 27 7.2
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 27 7.2
At5g51300.2 68418.m06360 splicing factor-related contains simila... 27 9.5
At5g51300.1 68418.m06359 splicing factor-related contains simila... 27 9.5
At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /... 27 9.5
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 27 9.5
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 27 9.5
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 27 9.5
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 27 9.5
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 27 9.5
At3g63070.1 68416.m07084 PWWP domain-containing protein putative... 27 9.5
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr... 27 9.5
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr... 27 9.5
At3g09000.1 68416.m01053 proline-rich family protein 27 9.5
At2g33480.1 68415.m04104 no apical meristem (NAM) family protein... 27 9.5
At2g36810.1 68415.m04514 expressed protein 24 9.7
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
+G GFV FS+PEEAT+A+TEMNG+++ TKPLYVALAQRKEDRKA L
Sbjct: 367 RGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARL 412
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
KGFGFV F + ++A +AV +NG+ K +V AQ+K +R+ L
Sbjct: 264 KGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETEL 309
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 99
KG+GFV + + E A A+ ++NG ++ K +YV
Sbjct: 173 KGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/37 (27%), Positives = 25/37 (67%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 114
G+G+V +++P++A++A+ E+N + + + V + R
Sbjct: 87 GYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVR 123
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 79.0 bits (186), Expect = 2e-15
Identities = 32/46 (69%), Positives = 43/46 (93%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
+GFGFV +S+PEEA +A++EMNG+++G KPLY+ALAQRKEDR+AHL
Sbjct: 372 RGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHL 417
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +1
Query: 7 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
FGFV F E A AV +MNG +G LYV AQ+K +R+ L
Sbjct: 271 FGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEEL 314
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
KG+GFV F E A A+ ++NG ++ K ++V R+++R
Sbjct: 176 KGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 74.9 bits (176), Expect = 4e-14
Identities = 32/46 (69%), Positives = 41/46 (89%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
+GFGFV +S+PEEA A+ EMNG+++G KPLYVALAQRKE+R+AHL
Sbjct: 368 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHL 413
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/46 (52%), Positives = 29/46 (63%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
+ FGFV F SPE A AV +MNG +G LYV AQ+K DR+ L
Sbjct: 265 RSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEEL 310
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
KG+GFV F E A A+ ++NG ++ K ++V R++DR
Sbjct: 172 KGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/46 (58%), Positives = 41/46 (89%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
KG GFV F++PEEAT+A+++++G+++ +KPLYVA+AQRKEDR+ L
Sbjct: 172 KGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRL 217
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
KGFGFV F + ++A +AV +NG K YV AQ+K +R+ L
Sbjct: 69 KGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 114
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
KG GFV FS+ EA++ + EMNG++VG KPLYVALAQRKE+R+A L
Sbjct: 368 KGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKL 413
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +1
Query: 7 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLT 141
FGFV F +PE+A +AV +NG+ K YV AQ+K +R+ L+
Sbjct: 267 FGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELS 311
Score = 40.7 bits (91), Expect = 7e-04
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 132
+G+GFV F + + A A+ ++NG+++ K ++V RKE+R++
Sbjct: 174 RGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERES 217
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/46 (65%), Positives = 36/46 (78%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
KGFGFVCFS+PEEA AV +G++ KPLYVA+AQ+KEDRK L
Sbjct: 344 KGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQL 389
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
+G+ FV F +PE+A +A +NG G+K LYV AQ+K +R+
Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
Score = 36.3 bits (80), Expect = 0.016
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
+G+GFV F + A A+ +N IV K +YV +K DR
Sbjct: 152 RGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 64.1 bits (149), Expect = 7e-11
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
KG GFV FS+ EEA+KA+ +MNG++VG KP+YV+LAQ KE K HL
Sbjct: 263 KGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHL 308
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +1
Query: 7 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
FGFV F E A A+ +MNG +V K L+V AQRK +R L
Sbjct: 161 FGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDL 204
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
KGFGFVCFS+ EE+ +A +NG +V KP+ V +A+RKEDR
Sbjct: 344 KGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR 385
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
+GFGFV F +PE A KA+ + G +G+K L+V A +K++R+ L
Sbjct: 242 RGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREML 287
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 132
KGFGFV F + + A A + ++G +V K L+VA K++R A
Sbjct: 151 KGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAA 194
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/44 (38%), Positives = 31/44 (70%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 132
KGFGF+ F S ++A KA+ ++G+IV + ++V +A+ E+ +A
Sbjct: 48 KGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAKNAEEVRA 91
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 120
KGFGFV F+S +EA KA+ E NG+ + + ++V A+ K+
Sbjct: 75 KGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 41.1 bits (92), Expect = 5e-04
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 120
KG+GFV F +P + A+ EMNG+ VG +P+ + + KE
Sbjct: 178 KGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKE 217
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 40.7 bits (91), Expect = 7e-04
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 120
KGFGF+ F S ++A KA+ +NG+IV + ++V A+ E
Sbjct: 107 KGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAKEVE 146
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 40.7 bits (91), Expect = 7e-04
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
KG+GFV F+ E +A+TEMNG+ T+P+ + A K
Sbjct: 196 KGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANK 234
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 120
KG+GFV FS E +A+TEMNG T+P+ + A K+
Sbjct: 197 KGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 120
KG+GFV FS E +A+TEMNG T+P+ + A K+
Sbjct: 197 KGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 123
KG+GFV F+ E +A+ EMNG T+P+ ++ A K++
Sbjct: 158 KGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 102
KG+G+V F + A +AV M G+++G + + ++
Sbjct: 272 KGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRIS 305
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 120
KG+GFV F+ E +A+TEMNG+ ++P+ A K+
Sbjct: 215 KGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
KG+GFV F E ++A+TEMNG ++ + V +A K
Sbjct: 255 KGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPK 293
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVG 81
KG GFV F++ + A +A+ +NG ++G
Sbjct: 362 KGCGFVQFANRQSAEEAIGNLNGTVIG 388
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
KGFGFV +++ E+A KA EMN + + ++V A+ +E R+
Sbjct: 75 KGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRR 117
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
KG+GFV F E ++A+TEMNG + + V +A K
Sbjct: 244 KGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVG 81
KG GFV F+ + A A+ +NG ++G
Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIG 382
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 36.3 bits (80), Expect = 0.016
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 123
+GF F+ F S + A +A+ M+GR++G K L V + ED
Sbjct: 57 RGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQRTPKVED 97
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 36.3 bits (80), Expect = 0.016
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 114
G+GFV F++ EEA A+T++NG+ + +P+ + + R
Sbjct: 237 GYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLR 273
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 35.5 bits (78), Expect = 0.027
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
KGFGFV SS +E KA+ +NG + + + V+ A+ + R
Sbjct: 290 KGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 331
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 99
+GFGFV S+ E A + NG +PL V
Sbjct: 140 RGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 35.5 bits (78), Expect = 0.027
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
KGFGFV SS +E KA+ +NG + + + V+ A+ + R
Sbjct: 298 KGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 339
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 99
+GFGFV S+ E A + NG +PL V
Sbjct: 140 RGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 35.5 bits (78), Expect = 0.027
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
KG+G + F+SPEEA KA+ EMNG+++ + + + LA +
Sbjct: 424 KGYGHIEFASPEEAQKAL-EMNGKLLLGRDVRLDLANER 461
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIV 78
KGF +V FSS EEA KA+ E+N ++V
Sbjct: 62 KGFAYVTFSSKEEAEKALLELNAQLV 87
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNG 69
KG+GFV F E TKA+TEMNG
Sbjct: 241 KGYGFVRFGDENERTKAMTEMNG 263
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
KG GFV F + A +A+ ++NG ++G + + ++ + +++
Sbjct: 341 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 383
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNG 69
KG+GFV F E TKA+TEMNG
Sbjct: 239 KGYGFVRFGDENERTKAMTEMNG 261
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNG 69
KG+GFV F E TKA+TEMNG
Sbjct: 239 KGYGFVRFGDENERTKAMTEMNG 261
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
KG GFV F + A +A+ ++NG ++G + + ++ + +++
Sbjct: 339 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 381
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 34.7 bits (76), Expect = 0.047
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
+GFGFV + E+A +A+ MN +++G + + + A+ E+RK
Sbjct: 88 RGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAE--ENRK 128
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 34.7 bits (76), Expect = 0.047
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
+GFGFV FS + A A+ EM+G+ + + + V LA +
Sbjct: 76 RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 34.7 bits (76), Expect = 0.047
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
+GFGFV FS + A A+ EM+G+ + + + V LA +
Sbjct: 76 RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 34.7 bits (76), Expect = 0.047
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +3
Query: 234 APSSTTLYGPAQMTQ-IRPTTPRWNAQPPVRPSTQAASAYANMQPT---YRPAPRAPAQS 401
+PSS A ++ IRP++P + RPST ++ A+ T RP + +
Sbjct: 175 SPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMD 234
Query: 402 TIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPA 509
R SL +RP T +A+S +SRP+
Sbjct: 235 KARPSLSSRPSTPTSRPQLSASSPNIIASRPNSRPS 270
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 34.7 bits (76), Expect = 0.047
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 93
+GFGFV F + ++A A+ EMNG+ V ++ +
Sbjct: 193 RGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 223
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 34.7 bits (76), Expect = 0.047
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 93
+GFGFV F + ++A A+ EMNG+ V ++ +
Sbjct: 189 RGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 219
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 123
KGF F+ + + EEA KA+ M+G+ + + ++V A+ + D
Sbjct: 118 KGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSD 158
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 33.9 bits (74), Expect = 0.083
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
KGF FV F+ ++A A+ + NG + G +P+ V A K
Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPK 410
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 120
+GFGF+ F S E A+ MNG V + L + LA +E
Sbjct: 260 RGFGFISFESAENVQSALATMNGVEVEGRALRLNLASERE 299
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 99
+GFGFV S EEA +A+ N +G + + V
Sbjct: 157 RGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 93
+GFGFV F + ++A A+ EMNG+ + ++ +
Sbjct: 185 RGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 7 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 132
FGF+ F S +EA +A+ N +GT + V +A + D A
Sbjct: 11 FGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENA 52
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
+GFGF+ F+ A A+ M+GR +G K + V A+ K
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
+GFGF+ F+ A A+ M+GR +G K + V A+ K
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 105
K FGFV + S A A+ MNGR +G K L V L
Sbjct: 390 KCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 120
+G+GFVC+SS E A+ ++G + + + V LAQ K+
Sbjct: 218 RGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 32.3 bits (70), Expect = 0.25
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
+GFGF+ + S E + A+ M G+ + + + V+ A +K+ +
Sbjct: 154 RGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTK 195
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 111
+GF FV + +EA KAV ++GR+V + + V A+
Sbjct: 57 RGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 111
+GF FV + +EA KAV ++GR+V + + V A+
Sbjct: 57 RGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAK 93
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 31.9 bits (69), Expect = 0.33
Identities = 12/45 (26%), Positives = 28/45 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 135
KGFGFV +++ E++ K + M+G+ + ++ A+ +E +++
Sbjct: 97 KGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSY 141
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 31.9 bits (69), Expect = 0.33
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNG 69
+GFGFV F S E+A +A+ ++NG
Sbjct: 215 RGFGFVSFVSREDAQRAINKLNG 237
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
KG+ F+ +++ E A A+ EMNG+I+ + V +A+ K R+
Sbjct: 323 KGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTKPFRQ 365
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
+GFGF+ F P +A +A +M+G ++ + L V A+ E+RK
Sbjct: 78 RGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAE--ENRK 118
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 31.9 bits (69), Expect = 0.33
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Frame = +3
Query: 234 APSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQS---- 401
A ++TT P ++QI+P++P A+P PS A + A PT R P P+
Sbjct: 324 ASAATTTANPT-ISQIKPSSPA-PAKPMPTPSKNPALSRA-ASPTVRSRPWKPSDMPGFS 380
Query: 402 -----TIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPAIINIHQTCA 536
+RT+L RP++ +G A +S R V P Q+C+
Sbjct: 381 LETPPNLRTTLPERPLSATRGRPGAPSS-RSGSVEPGGPPGGRPRRQSCS 429
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 237 PSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 416
P+++T +T+ P+T +A P + + S + PT RP P+++ R+S
Sbjct: 256 PTTSTARSAGSVTRSTPSTTTKSAGPSRSTTPLSRSTARSSTPTSRPT-LPPSKTISRSS 314
Query: 417 LGA-RPITGQQGVAAAAASIRPPLVSQ 494
RPI A+AA + P +SQ
Sbjct: 315 TPTRRPIAS----ASAATTTANPTISQ 337
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 135
KGFGFV + S +E A+ ++G + + + V+ A+ + R+ +
Sbjct: 245 KGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 99
+GFGFV SS E A + NG + +PL V
Sbjct: 132 RGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 13 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 138
FV FS PEE TKA+ +++GR G + + ++ K L
Sbjct: 336 FVQFSRPEETTKALVDLDGRYFGGRTVRATFYDEEKFSKNEL 377
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 294 PRWNAQPPVRPSTQAASAYANMQPTYRPAPR-APAQSTIRTSLGARPITGQQGVAAAAAS 470
P + +P S+ +S+ PT R P AP Q+ +R +PI +A
Sbjct: 12 PTDDEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNKPKPIV--------SAP 63
Query: 471 IRPPLVSQSSRPAIINIHQTCATHQ 545
+PP S SS+ +I +++ +HQ
Sbjct: 64 YKPPPPSNSSQSVLIPANESAPSHQ 88
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
+GFGFV S+ EEA KAV + N V + L V A + R
Sbjct: 154 RGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSR 195
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
+GFGFV S+ E A+ ++G+ + + + V +A+ + R
Sbjct: 248 RGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 31.5 bits (68), Expect = 0.44
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRI 75
G+G+V F+S E+A AV MNG++
Sbjct: 100 GYGYVWFNSKEDAQSAVEAMNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 111
G+G+V F+S E+A AV MNG+ + + V Q
Sbjct: 119 GYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQ 154
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.5 bits (68), Expect = 0.44
Identities = 12/45 (26%), Positives = 28/45 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 135
+GFGFV S +E +A++ ++G+ + + + V +A+ + R+ +
Sbjct: 285 RGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMN 66
+GFGFV SS +EA AV + N
Sbjct: 191 RGFGFVTMSSVDEAETAVEKFN 212
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 105
+GFGFV +SS EA AV+ M+G+ + + + V L
Sbjct: 44 RGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
+GFG V F+S EEA KA+ E +GR + + + + +AQ + +R
Sbjct: 338 RGFGHVEFASSEEAQKAL-EFHGRPLLGREIRLDIAQERGER 378
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 31.5 bits (68), Expect = 0.44
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 93
+GFGFV F + ++A A+ E+ G+ +G++ +
Sbjct: 180 RGFGFVSFRNQQDAQTAIDEITGKWLGSRQI 210
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 237 PSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 392
P+ T PA RP PR +A P P A +YA + ++ P P P
Sbjct: 326 PTQLTDMNPANFYTSRPHAPRSHAPPTYAPRPHAPRSYAPIN-SHLPRPNIP 376
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGR 72
+GFGFV F+S E A+ A+ ++GR
Sbjct: 81 RGFGFVTFTSSEAASSAIQALDGR 104
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 126
+GFGF+ F+ +++ EM+GR G + + V A+ K R
Sbjct: 48 RGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGR 89
>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member: At2g22510
[Arabidopsis thaliana]
Length = 128
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 228 TIAPSSTTLYGPAQMT--QIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 386
T P +L P Q T Q +PT P+ PP+ PSTQ S +QPT P+
Sbjct: 51 TTMPPVPSLPTPGQQTLPQPQPTLPQPTGLPPM-PSTQIPSLPNQVQPTIPNIPQ 104
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNG 69
+GFGFV F S E+A +A+ ++NG
Sbjct: 254 RGFGFVNFVSREDAQRAINKLNG 276
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
+ FGFV ++ A KAV + V +PL V LA+ + +RK
Sbjct: 331 RDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
KG+ FV F + + A KA+ E++ + K + +L++ K
Sbjct: 157 KGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETK 195
>At2g32300.1 68415.m03949 uclacyanin I identical to uclacyanin I
GI:3399767 from [Arabidopsis thaliana]; contains Pfam
profile PF02298: Plastocyanin-like domain; identical to
cDNA uclacyanin I GI:3399766
Length = 261
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +3
Query: 312 PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVS 491
PP+ P+ A+A P + +P + + +T ++G P + A A + PP S
Sbjct: 180 PPLSPALSPATAAGTSLPLFPGSPGSSSSTTSTKTVGTFPSSTTGTTADLAGADSPPADS 239
Query: 492 QSSRPAII 515
S+ ++
Sbjct: 240 SSAAKTLV 247
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTK 87
KG+GFV F + AT+AV + N I G K
Sbjct: 58 KGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTK 87
KG+GFV F + AT+AV + N I G K
Sbjct: 58 KGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
+GFGFV F P +A A M+G ++ + L V A+ E+RK
Sbjct: 77 RGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAE--ENRK 117
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTK 87
KG+GFV F + AT+AV + N I G K
Sbjct: 58 KGYGFVTFRDSDSATRAVADPNPVIDGRK 86
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 111
G GFV F+S EA KA+ +MNG + ++ +++ + +
Sbjct: 530 GCGFVEFASVNEAQKALQKMNGENLRSREIFLDVVE 565
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
G GFV F+S EA +A+ + NG + +++ +A +K
Sbjct: 168 GCGFVEFASVNEAEEALQKKNGECLDNNKIFLDVANKK 205
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 111
G+GFV F+S +E KA+ NG + +++ +A+
Sbjct: 285 GYGFVEFASADETKKALENKNGEYLHDHKIFIDVAK 320
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
+GFGFV F + A+ EMNG+ + + + V AQ +
Sbjct: 47 RGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
+GFGFV F + A+ EMNG+ + + + V AQ +
Sbjct: 47 RGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
+GFGFV F + A+ EMNG+ + + + V AQ +
Sbjct: 47 RGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGR 72
+GFGFV F+ AT A++EM+G+
Sbjct: 76 RGFGFVNFNDEGAATAAISEMDGK 99
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGR 72
+GFGFV F+ AT A++EM+G+
Sbjct: 76 RGFGFVNFNDEGAATAAISEMDGK 99
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 25.8 bits (54), Expect(2) = 1.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 449 SCCCCCIYSSTFSISK 496
SCCCCC S+ S K
Sbjct: 51 SCCCCCSTPSSSSFVK 66
Score = 22.6 bits (46), Expect(2) = 1.2
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 440 TARSCCCCC 466
++RS CCCC
Sbjct: 47 SSRSSCCCC 55
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +3
Query: 207 WCKWIFCTIAPSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 386
W + T PS + P Q + PT QPP +P TQ + + PT P P
Sbjct: 18 WALLVSPTRPPSQPPSHPPIQPSSQPPT------QPPSQPPTQPPTQPPSHPPTQPPTP- 70
Query: 387 APAQSTIRTS 416
P+QS + S
Sbjct: 71 PPSQSPSQPS 80
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Frame = +3
Query: 237 PSSTTLYGPAQMTQIRPTTPRWNAQPP---VRPSTQAASAYANMQPTYRPAPRAPAQSTI 407
PSS T P PTTP PP + PS PT +P +P+ T
Sbjct: 495 PSSPTTPTPGGSPPSSPTTPSPGGSPPSPSISPSPPITVPSPPSTPTSPGSPPSPSSPTP 554
Query: 408 RTSLGARPITGQQGVAAAAASIRPPLV 488
+ + + P + PP++
Sbjct: 555 SSPIPSPPTPSTPPTPISPGQNSPPII 581
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/66 (30%), Positives = 24/66 (36%)
Frame = +3
Query: 234 APSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRT 413
+P STT + T PTTP PP P+T PT +P S
Sbjct: 457 SPPSTTPSPGSPPTS--PTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTP 514
Query: 414 SLGARP 431
S G P
Sbjct: 515 SPGGSP 520
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 IAPSSTTLYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 407
+ P + T P Q + +P TP ++ PPV+P P +P P P T
Sbjct: 475 VKPPTPTYSPPVQPPPVQKPPTPTYS--PPVKPPPIQKPPTPTYSPPIKPPPVKPPTPTY 532
Query: 408 RTSLGARPITGQQGVAAAAASIRPPLVSQSSRP 506
+ P+ + + I+PP + + P
Sbjct: 533 SPPIKPPPV-HKPPTPTYSPPIKPPPIHKPPTP 564
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 111
KG+ F+ F+S ++A A+ M+ R+ + +Y+ +A+
Sbjct: 81 KGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAK 117
>At4g01280.1 68417.m00169 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 302
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Frame = +3
Query: 312 PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRT-------SLGARPITGQQGVAAAAAS 470
PP RP +A+ Y P P+ ST+ S ++ + G Q V A+ +S
Sbjct: 117 PPPRPKRKASHPYPIKAPKNVAYTSLPSSSTLPLLEPGYLYSSDSKSLMGNQAVCASTSS 176
Query: 471 IRPPLVSQSSRPAIINIHQTCATHQLHNQQCISKDKE 581
+ +P I AT L N +C +D E
Sbjct: 177 SWNHESTNLPKPVIEEEPGVSATAPLPNNRCRQEDTE 213
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAV-----TEMNGRIVGTKP 90
+GFGFV + S E A A+ E++GRI+G P
Sbjct: 77 RGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHP 111
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +3
Query: 234 APSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 404
+P + T PA Q P P PP PS+ S P P P+ P QST
Sbjct: 53 SPDTQTSPPPATAAQPPPNQPPNTTPPPTPPSSPPPSI---TPPPSPPQPQPPPQST 106
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMN----GRIVGTKPLYV 99
KGFGFV F E AT+A N GR V K Y+
Sbjct: 50 KGFGFVTFREVESATRACENPNHTIDGRTVNCKLAYL 86
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGR 72
+G+GFV F S + A A++ MNG+
Sbjct: 72 RGYGFVNFISEDSANSAISAMNGQ 95
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 99
K +GFV FS+ A A+ +M+G+ +G + + V
Sbjct: 47 KCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRV 79
>At4g29000.1 68417.m04145 tesmin/TSO1-like CXC domain-containing
protein similar to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427,
SP|Q9Y4I5 Tesmin (Metallothionein-like 5,
testis-specific) {Homo sapiens}; contains Pfam profile
PF03638: Tesmin/TSO1-like CXC domain
Length = 603
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/73 (32%), Positives = 32/73 (43%)
Frame = +3
Query: 228 TIAPSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 407
TI P T G Q+TQ+RPT P A P +Q+ A P P P +P
Sbjct: 65 TIRPGMTIAIG--QVTQVRPTLPM--ATTMSNPPSQSQIVNA---PIRHPIPESPKARGP 117
Query: 408 RTSLGARPITGQQ 446
R ++ R T Q+
Sbjct: 118 RPNVEGRDGTPQK 130
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 261 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSL 419
P ++ RPTTP+ P P + + A + YRP P P Q T +
Sbjct: 282 PPRLDAPRPTTPK-----PPSPRSVSPRAVQRREIVYRPEPTLPVQHASATKI 329
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 261 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSL 419
P ++ RPTTP+ P P + + A + YRP P P Q T +
Sbjct: 281 PPRLDAPRPTTPK-----PPSPRSVSPRAVQRREIVYRPEPTLPVQHASATKI 328
>At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 428
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 98 LH*LNARRTVKRT*HLSTCREWLVCACSKWAKYSSLVVQVDFLYHRSLQHHVIWTSS 268
+H L+ RR R + L+ CSK K S L +D+L LQ V+W S
Sbjct: 261 VHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVMWMGS 317
>At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 430
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 98 LH*LNARRTVKRT*HLSTCREWLVCACSKWAKYSSLVVQVDFLYHRSLQHHVIWTSS 268
+H L+ RR R + L+ CSK K S L +D+L LQ V+W S
Sbjct: 261 VHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVMWMGS 317
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
+GFG+V F+S E+A A+ +G + L V +A KE+ +
Sbjct: 44 RGFGYVTFASAEDAKNAL--KGEHFLGNRILEVKVATPKEEMR 84
>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
to gi|10880497|gb|AAG24278; supported by Ceres cDNA
265772
Length = 127
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +3
Query: 234 APSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRA---PAQST 404
AP+ + L PAQ + TP P PS +A + P P P + PA T
Sbjct: 27 APTRSPLPSPAQPPRTAAPTPSITPTPTPTPSATPTAAPVS-PPAGSPLPSSASPPAPPT 85
Query: 405 IRTSLGARPITGQQG 449
T GA P+ G G
Sbjct: 86 SLTPDGA-PVAGPTG 99
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIV 78
GFGFV FSS E+ A+ +N ++
Sbjct: 219 GFGFVTFSSEEDVEAAIVALNNSLL 243
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 13 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 111
FV F +A KA+ MNG+++ KP+ + ++
Sbjct: 223 FVEFFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
transposon protein GB:AAB95292 GI:2088658 from
[Arabidopsis thaliana]
Length = 1148
Score = 28.7 bits (61), Expect = 3.1
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Frame = +3
Query: 237 PSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANM-QPTYR------PAPRAPA 395
PS P ++ T A P VR ++ +S+ N P + P A
Sbjct: 198 PSGPVSRSPTPTSRRMSTGSTTMASPAVRGTSPVSSSRGNSPSPKIKVWQSNIPGFSLDA 257
Query: 396 QSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPAIINIHQTCATHQLHNQQCISKD 575
+RTSLG RP + +G + A+ + R + ++S + + ++ ++ H + S
Sbjct: 258 PPNLRTSLGDRPASYVRGSSPASRNGRDAVSTRSRKSVSPSASRSVSSSHSHERDRFSSQ 317
Query: 576 KEPS 587
+ S
Sbjct: 318 SKGS 321
>At1g06760.1 68414.m00718 histone H1, putative similar to histone
H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana];
identical to cDNA H1-1C mRNA for histone H1-1 (partial)
GI:732560
Length = 274
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 318 VRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARP-ITGQQGVAAAAASIRPP 482
V+P T AA + +P PRA A +T R ++ A+P + AA A + P
Sbjct: 176 VKPKTAAAKK-VTAKAKAKPVPRATAAATKRKAVDAKPKAKARPAKAAKTAKVTSP 230
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 28.3 bits (60), Expect = 4.1
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +3
Query: 261 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP-AQSTIRTSLGARPIT 437
P + + PTT PP P + + + ++ T PAP AP + STI S + P+T
Sbjct: 205 PKSGSPVSPTT-----SPPAPPKSTSPVSPSSAPMTSPPAPMAPKSSSTIPPS--SAPMT 257
Query: 438 GQQGVAAAAAS---IRPPLVSQSSRP 506
G A +S P VS S P
Sbjct: 258 SPPGSMAPKSSSPVSNSPTVSPSLAP 283
>At3g25240.1 68416.m03153 hypothetical protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 281
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -3
Query: 317 RGLCIPPWSCRSYLSHLSW--SI*RGAGGSDGTK 222
RGL +PPW SYL H W R G S G K
Sbjct: 222 RGLSLPPWRRSSYLQH-KWFGPYKRKVGSSLGVK 254
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 28.3 bits (60), Expect = 4.1
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Frame = +3
Query: 234 APSSTTLYGPAQMTQ--IRPTTPRWN--AQPPVRPSTQAASAYANMQPTYR-----PAPR 386
+PS P Q T+ P T + +QP VRP QA S +Y +P
Sbjct: 56 SPSLNPNPNPPQYTRPVTSPATQQQQHLSQPLVRPPPQAYSRPWQQHSSYTHFSSASSPL 115
Query: 387 APAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPA 509
+ S +S + PI+GQQ A P+ S S P+
Sbjct: 116 LSSSSAPASSSSSLPISGQQRGGMAIGVPASPIPSPSPTPS 156
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 108
+GFGFV F+ +A A M+G+ + +PL ++ A
Sbjct: 82 RGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTE---MNGRIVGTK 87
+GFGFV F+ P A +TE ++GR+V K
Sbjct: 47 RGFGFVVFADPAVAEIVITEKHNIDGRLVEAK 78
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTE---MNGRIVGTK 87
+GFGFV F+ P A +TE ++GR+V K
Sbjct: 47 RGFGFVVFADPAVAEIVITEKHNIDGRLVEAK 78
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 291 TPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQ 398
T R++ Q P +P + + N QPT R P+ P+Q
Sbjct: 361 TGRFDPQSPNQPPSAPRPQFPNQQPTGRFDPQFPSQ 396
>At1g01060.2 68414.m00007 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Frame = +3
Query: 264 AQMTQIRPTTPRWNAQPPVRPSTQAASAYANM-QPTYRPAPRAPAQSTIRTSLGARPITG 440
A T P ++Q R Q +S ++N+ T P A A +T S+ G
Sbjct: 269 ATTTASHQAFPACHSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVG 328
Query: 441 QQGVAAAAASIRPPLVSQSSRPAIINIHQTCATHQL 548
G ++ S PP ++ + + A+H L
Sbjct: 329 NSGDSSTPMSSSPPSITAIAAATVAAATAWWASHGL 364
>At1g01060.1 68414.m00006 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Frame = +3
Query: 264 AQMTQIRPTTPRWNAQPPVRPSTQAASAYANM-QPTYRPAPRAPAQSTIRTSLGARPITG 440
A T P ++Q R Q +S ++N+ T P A A +T S+ G
Sbjct: 269 ATTTASHQAFPACHSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVG 328
Query: 441 QQGVAAAAASIRPPLVSQSSRPAIINIHQTCATHQL 548
G ++ S PP ++ + + A+H L
Sbjct: 329 NSGDSSTPMSSSPPSITAIAAATVAAATAWWASHGL 364
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNG 69
+GFGFV F + A+ EMNG
Sbjct: 47 RGFGFVTFKDEKAMRDAIEEMNG 69
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +3
Query: 300 WNAQPPVRPSTQAASAYANMQPTYRPAP---RAPAQSTIRTSLGARPITG--QQGVAAAA 464
W QP RP Q++ Y PTY PAP + P +S + P +G QQ + A
Sbjct: 239 WPPQPQARP--QSSGGY----PTYSPAPPGNQPPVESLPSSMQMQSPYSGPPQQSMQAYG 292
Query: 465 ASIRPP 482
PP
Sbjct: 293 YGAAPP 298
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +3
Query: 300 WNAQPPVRPSTQAASAYANMQPTYRPAP---RAPAQSTIRTSLGARPITG--QQGVAAAA 464
W QP RP Q++ Y PTY PAP + P +S + P +G QQ + A
Sbjct: 297 WPPQPQARP--QSSGGY----PTYSPAPPGNQPPVESLPSSMQMQSPYSGPPQQSMQAYG 350
Query: 465 ASIRPP 482
PP
Sbjct: 351 YGAAPP 356
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 111
+GFGF+ F + +A+ MNG + + + V AQ
Sbjct: 48 RGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQ 84
>At3g06040.2 68416.m00691 ribosomal protein L12 family protein
contains similarity to 50S ribosomal protein L12-C,
chloroplast precursor GB:P36212 from [Arabidopsis
thaliana]
Length = 186
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 485 SISKQSPSNYKYTPNMRNP--PAPQPAVHI 568
S+SK P YKY P++ +P P PQP+ I
Sbjct: 32 SVSKAKPKKYKY-PSVYDPYGPRPQPSSKI 60
>At3g06040.1 68416.m00690 ribosomal protein L12 family protein
contains similarity to 50S ribosomal protein L12-C,
chloroplast precursor GB:P36212 from [Arabidopsis
thaliana]
Length = 186
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 485 SISKQSPSNYKYTPNMRNP--PAPQPAVHI 568
S+SK P YKY P++ +P P PQP+ I
Sbjct: 32 SVSKAKPKKYKY-PSVYDPYGPRPQPSSKI 60
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 234 APSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAA-SAYANMQPTYRPAPRAP 392
A +S+ G +Q I P+T +QP + P T A+ SA PT RP P AP
Sbjct: 82 AAASSASAGTSQAKSIPPST----SQPSISPQTPASVSAPVAPAPT-RPPPPAP 130
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 234 APSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAA-SAYANMQPTYRPAPRAP 392
A +S+ G +Q I P+T +QP + P T A+ SA PT RP P AP
Sbjct: 82 AAASSASAGTSQAKSIPPST----SQPSISPQTPASVSAPVAPAPT-RPPPPAP 130
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTK 87
KG+GFV F E A +A MN I G +
Sbjct: 63 KGYGFVTFKEAEAAMRACQNMNPVIDGRR 91
>At2g31090.1 68415.m03797 expressed protein
Length = 75
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 377 WSVSGLHICICRCCLC 330
W V L CIC CCLC
Sbjct: 32 WIVGLLLSCICPCCLC 47
>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 398
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Frame = -3
Query: 407 YCRLGRSSRCWS---VSGLHICICRCCL-CARPYRGLCIPPW----SCRSY 279
YC R S S +SGL+I + RCC+ C P+ C W SC Y
Sbjct: 245 YCPNPRCSTLMSETELSGLNIGVRRCCVKCGEPFCVKCKVSWHNNLSCDEY 295
>At2g05120.1 68415.m00539 expressed protein
Length = 1234
Score = 27.9 bits (59), Expect = 5.4
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Frame = +3
Query: 264 AQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQ 443
A+ + TPR PP P T A N RPA PA R S+ AR G
Sbjct: 9 AKQSSRNEKTPRNRVPPPDSPVTPATQNRNNFISD-RPATGTPAPWAPRLSVLARVSPGN 67
Query: 444 QG-VAAAAASIRPPLVSQSSRPAIINIHQT-----CATHQLHNQQCIS 569
G + ++P V + P ++ Q+ C + + + C+S
Sbjct: 68 NGDKGVDSDQLKPVFVGEF--PQLLRDEQSYPGDACVSGGMDKETCLS 113
>At1g62210.1 68414.m07017 expressed protein
Length = 176
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = +3
Query: 231 IAPSSTTLYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIR 410
+APS T G T+ P P++ S A + RPAP ++T+
Sbjct: 66 VAPSHVTEGGSTNGTKT-PVIGVIVGVSPIKESGATIGTKAPLNGVLRPAPLREGEATLA 124
Query: 411 TSLGARPITGQQGVAAAAAS 470
T+ +P GV S
Sbjct: 125 TNNTGKPSVSVMGVGTNVQS 144
>At1g47660.1 68414.m05295 hypothetical protein
Length = 275
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +3
Query: 228 TIAPSSTTLYGPAQMTQIRPTTPR--WNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQS 401
TIAP + P RPTTP W PP + A A A++ APA+
Sbjct: 23 TIAPRAAPPARPTTPPPARPTTPPPVWPTTPPPAGAPVAVPAAAHVAVPAAAPVAAPAEL 82
Query: 402 TIRTS 416
TS
Sbjct: 83 GETTS 87
>At1g31250.1 68414.m03825 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
similar to prolin rich protein GB:S44189 GI:433706 from
[Zea mays]
Length = 165
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +3
Query: 303 NAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGV---AAAAASI 473
++ PPV P+ + S N P+ + P + S T A P G A+ + +
Sbjct: 40 SSAPPVPPNA-SLSIPPNSSPSVKLTPPYASPSVKLTPPYASPSVRPAGTTPNASPSVKL 98
Query: 474 RPPLVSQSSRPA 509
PP S S RPA
Sbjct: 99 TPPYASPSMRPA 110
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +3
Query: 261 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 416
P + +P PR PP P S + P PAP AP + TS
Sbjct: 676 PISNSDKKPALPR--PPPPPPPPPMQHSTVTKVPPPPPPAPPAPPTPIVHTS 725
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 586 EGSLSLDMHCWLWSWWVAHVW 524
E LSL WLWSW H+W
Sbjct: 1303 EFPLSLSSASWLWSW--QHIW 1321
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 4 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 111
G+GFV F+SP A A+ + NG + +++ +A+
Sbjct: 723 GYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAK 758
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
+GFGFV F + A+ MNG+ + + + V AQ +
Sbjct: 49 RGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 117
+GFGFV F + A+ MNG+ + + + V AQ +
Sbjct: 49 RGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 288 TTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP-AQSTIRTSLGARPITGQQGVAAAA 464
+ P + PP PS A + +P P PR P +S G+RP + +
Sbjct: 234 SNPMVRSSPPGHPSPSAHLEEMSNRPPLHPQPRVPVTRSNSAKVSGSRPRKYHKRTNSEL 293
Query: 465 ASIRPPLVSQSSR 503
+S+ LV SSR
Sbjct: 294 SSM---LVGDSSR 303
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTE 60
KG+GFV F PE A KA +
Sbjct: 48 KGYGFVTFCDPEAAQKACVD 67
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTE 60
KG+GFV F PE A KA +
Sbjct: 48 KGYGFVTFCDPEAAQKACVD 67
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 105
K FGF+ + S A A+ MNG + K L V L
Sbjct: 380 KCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 105
K FGF+ + S A A+ MNG + K L V L
Sbjct: 371 KCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 108
KG+GFV ++ + A AV MNG + L V +A
Sbjct: 521 KGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 108
KG+GFV ++ + A AV MNG + L V +A
Sbjct: 521 KGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains Pfam profile PF00295: Polygalacturonase
(pectinase)
Length = 486
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +3
Query: 276 QIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQS 401
Q+ P TP P +P PT P P APA+S
Sbjct: 372 QVEPPTPT-KPLAPAKPPRHVGPLMPTKPPTMFPKPLAPAKS 412
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/74 (25%), Positives = 25/74 (33%)
Frame = +3
Query: 261 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITG 440
P +P P N QPP P + + A P P P P S +T+ P
Sbjct: 53 PPTPPTFQPAPPA-NDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAIT 111
Query: 441 QQGVAAAAASIRPP 482
A + PP
Sbjct: 112 PPPPPAITPPLSPP 125
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDR 126
+G GFV +SS E A A+ +NG +PL V A+ K +
Sbjct: 251 RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 295
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDR 126
+G GFV +SS E A A+ +NG +PL V A+ K +
Sbjct: 251 RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 295
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDR 126
+G GFV +SS E A A+ +NG +PL V A+ K +
Sbjct: 9 RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 53
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 1 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 129
+GFGFV FS P + + E + + T+ + V A +E+++
Sbjct: 47 RGFGFVIFSDPSVLDRVLQEKHS--IDTREVDVKRAMSREEQQ 87
>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
transcription factor HUA2, Arabidopsis thaliana,
EMBL:AF116556
Length = 1347
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +2
Query: 470 YSSTFSISKQSP----SNYKYTPNMRNPPAPQPAVH 565
YSS S+SK P SN+++ P + P P P H
Sbjct: 1183 YSSRVSLSKSMPRGEGSNFQHRPYPSSHPPPPPPSH 1218
>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 444
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 98 LH*LNARRTVKRT*HLSTCREWLVCACSKWAKYSSLVVQVDFLYHRSLQHHVIWTSS 268
+H L+ RR R + L+ CS+ K S L +D+L +Q V+W S
Sbjct: 260 VHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVMWMGS 316
>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 442
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 98 LH*LNARRTVKRT*HLSTCREWLVCACSKWAKYSSLVVQVDFLYHRSLQHHVIWTSS 268
+H L+ RR R + L+ CS+ K S L +D+L +Q V+W S
Sbjct: 260 VHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVMWMGS 316
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 237 PSSTTLYGPAQMTQIRPTTPRWNAQPPVRPS-TQAASAYANMQPTYRPAPRAPAQSTIRT 413
PS + P++ T PT + P S + ++ +P P A +RT
Sbjct: 254 PSIVSSKAPSRGTSPSPTVNSLSKAPSRGTSPSPTLNSSRPWKPPEMPGFSLEAPPNLRT 313
Query: 414 SLGARPIT---GQQGVAAAAAS 470
+L RP++ G+ GVA+A S
Sbjct: 314 TLADRPVSASRGRPGVASAPGS 335
>At2g33480.1 68415.m04104 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 268
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 419 RCKTHNWTARSCCCCCIYSSTFSI 490
RC N T +CCCC +S+ S+
Sbjct: 217 RCCDLNLTPATCCCCSSSTSSSSV 240
>At2g36810.1 68415.m04514 expressed protein
Length = 1071
Score = 23.8 bits (49), Expect(2) = 9.7
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +2
Query: 449 SCCCCCIYSSTFSISKQSPSNY 514
SCCCC + T + S+Y
Sbjct: 809 SCCCCIVRVYTLQMPSACMSHY 830
Score = 21.4 bits (43), Expect(2) = 9.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 368 LQTSTESSGPIY-NKNIVRCKTHNWTARSCCCCCI 469
L ST +G Y + + K ++ CCCCI
Sbjct: 780 LSFSTGVTGSTYLHDSNKSTKPSTKISKGSCCCCI 814
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,898,951
Number of Sequences: 28952
Number of extensions: 301364
Number of successful extensions: 1414
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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