Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0758.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5ZK09 Cluster: Uncharacterized protein C11orf73 homolo...    50   2e-05
UniRef50_Q6DCU7 Cluster: Uncharacterized protein C11orf73 homolo...    49   5e-05
UniRef50_Q53FT3 Cluster: Uncharacterized protein C11orf73; n=19;...    48   9e-05
UniRef50_Q9DD02 Cluster: Uncharacterized protein C11orf73 homolo...    47   2e-04
UniRef50_Q0FCJ0 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  
UniRef50_O23557 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  
UniRef50_Q5CVK1 Cluster: Predicted membrane associated protein, ...    32   8.2  

>UniRef50_Q5ZK09 Cluster: Uncharacterized protein C11orf73 homolog;
           n=5; Deuterostomia|Rep: Uncharacterized protein C11orf73
           homolog - Gallus gallus (Chicken)
          Length = 197

 Score = 50.4 bits (115), Expect = 2e-05
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = -3

Query: 488 TNXQIGISIEX*SQCA--TIGFICCTSRXXQLCDICSXNVRKLSQFCTSFSVTQDQMTPT 315
           T  QIGIS+E        T       S      +     +     F +SF+VTQ QMTP 
Sbjct: 107 TVAQIGISVELLENLVQQTPVANAAVSSVDSFTEFTQKMLDNFYNFASSFAVTQAQMTPN 166

Query: 314 PGVSYIPXNTLHTWYQNFER 255
           P  ++IP N +  WY+NF+R
Sbjct: 167 PSEAFIPANVVLKWYENFQR 186


>UniRef50_Q6DCU7 Cluster: Uncharacterized protein C11orf73 homolog;
           n=3; Coelomata|Rep: Uncharacterized protein C11orf73
           homolog - Xenopus laevis (African clawed frog)
          Length = 197

 Score = 49.2 bits (112), Expect = 5e-05
 Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 479 QIGISIEX*SQCA--TIGFICCTSRXXQLCDICSXNVRKLSQFCTSFSVTQDQMTPTPGV 306
           QIGIS+E   Q A  T       S            +     F TSF+V+Q QM P P  
Sbjct: 110 QIGISVELLEQMAQQTPVANAAVSTVDSFTQFTQKMLDNFYNFATSFAVSQAQMIPNPSE 169

Query: 305 SYIPXNTLHTWYQNFER 255
            +IP N +  WY+NF+R
Sbjct: 170 VFIPSNVVLKWYENFQR 186


>UniRef50_Q53FT3 Cluster: Uncharacterized protein C11orf73; n=19;
           Eumetazoa|Rep: Uncharacterized protein C11orf73 - Homo
           sapiens (Human)
          Length = 197

 Score = 48.4 bits (110), Expect = 9e-05
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -3

Query: 479 QIGISIEX*SQCATIGFI--CCTSRXXQLCDICSXNVRKLSQFCTSFSVTQDQMTPTPGV 306
           QIGIS+E     A    +     S            +     F +SF+V+Q QMTP+P  
Sbjct: 110 QIGISVELLDSMAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSE 169

Query: 305 SYIPXNTLHTWYQNFER 255
            +IP N +  WY+NF+R
Sbjct: 170 MFIPANVVLKWYENFQR 186


>UniRef50_Q9DD02 Cluster: Uncharacterized protein C11orf73 homolog;
           n=14; Coelomata|Rep: Uncharacterized protein C11orf73
           homolog - Mus musculus (Mouse)
          Length = 197

 Score = 47.2 bits (107), Expect = 2e-04
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 479 QIGISIEX*SQCA--TIGFICCTSRXXQLCDICSXNVRKLSQFCTSFSVTQDQMTPTPGV 306
           QIGIS+E     A  T       S            +     F +SF+++Q QMTP P  
Sbjct: 110 QIGISVELLDSLAQQTPVGSAAVSSVDSFTQFTQKMLDNFYNFASSFALSQAQMTPNPSE 169

Query: 305 SYIPXNTLHTWYQNFER 255
            +IP N +  WY+NF+R
Sbjct: 170 MFIPANVVLKWYENFQR 186


>UniRef50_Q0FCJ0 Cluster: Putative uncharacterized protein; n=1;
           alpha proteobacterium HTCC2255|Rep: Putative
           uncharacterized protein - alpha proteobacterium HTCC2255
          Length = 468

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 347 FSVTQDQMTPTPGVSY--IPXNTLHTWYQNFERGSSRILISGRIN 219
           F+  QD++     ++   +P NT+  W + F++ S R+ IS R+N
Sbjct: 179 FAALQDRLLKNHRITVQTLPINTMPEWTRRFDKHSMRLFISDRLN 223


>UniRef50_O23557 Cluster: Putative uncharacterized protein; n=1;
           Arabidopsis thaliana|Rep: Putative uncharacterized
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 1661

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +3

Query: 33  LPRKAKILSKIYYTCFYISGALPI 104
           L +K++ LS + YTC+++ GALP+
Sbjct: 450 LLKKSRFLSLLIYTCYFLQGALPL 473


>UniRef50_Q5CVK1 Cluster: Predicted membrane associated protein,
           signal peptide, transmembrane domain near C; n=2;
           Cryptosporidium|Rep: Predicted membrane associated
           protein, signal peptide, transmembrane domain near C -
           Cryptosporidium parvum Iowa II
          Length = 2123

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = +2

Query: 92  SPTNYSSLGNSLPSEQAYLVFINQNLNTHCSLTLTLHNNH*F 217
           SPT Y S+   +P     LVFIN   N    +TLT HN H F
Sbjct: 593 SPT-YLSIQIQIPEHPLSLVFINVLFNEKIWMTLTPHNIHNF 633


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 389,061,383
Number of Sequences: 1657284
Number of extensions: 6226963
Number of successful extensions: 12205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12201
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)