Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0758.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   3.6  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   6.3  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 397 VTFAQXMLENLVNFVHHSLLRKI 329
           V+FAQ  LE  +N + HSLL  I
Sbjct: 68  VSFAQVPLEEYLNLLGHSLLTSI 90


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -3

Query: 386 SXNVRKLSQFCTSFSVTQDQMTPTPGVSYIPXNTLHTWYQNFERGSSRIL 237
           S + +K+++   ++ VTQ  M+PT G    P +T  T  + F   +++++
Sbjct: 636 SDDFQKVTRMAQAY-VTQYGMSPTVGTIAYPIDTRETVQKPFSEATAQMI 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,752
Number of Sequences: 5004
Number of extensions: 28500
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)