Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0757.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.4  
Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      22   4.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   6.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +2

Query: 320 FHHDSWNCLHESCYRRISWILRCLNSN---QCYW--NCQWSIHFHRDCWNCIHKCC 472
           +H+++  C  E C     +  R +  N   QC +  NC+  ++  R C  C  K C
Sbjct: 198 YHYNALTC--EGCK---GFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKC 248


>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 594 WR*QHLMDTVPTVVNG 547
           WR +H++ T+  VV G
Sbjct: 18  WRGEHMVGTIVVVVRG 33


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 332 SWNCLHESCYRR-ISWILRCLNSNQCYWNC 418
           +W C+++ C RR I   +  ++ + C   C
Sbjct: 57  TWQCINQRCERRHIKGAIPVVSLSTCSMLC 86


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 395  SNQCYWNCQWSIHFHRDCWNCIHKCCY 475
            SN+C++  +  I     CWN +  C Y
Sbjct: 1112 SNRCFFPSKIRI-----CWNVLLNCVY 1133


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,993
Number of Sequences: 336
Number of extensions: 2785
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)