Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0757.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   2.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   3.6  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   3.6  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   6.3  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +3

Query: 315 YIFITTLGTVFMRAATAGFPGSYAV*IRISVTGTASGRYTSIATVGTVS-----ISAATA 479
           YI  TT+ T  +   T G+ G+    + +  TGT       I T  TV+     I   T 
Sbjct: 787 YIIPTTIVTGTVTTVTTGYTGTETSTVTVIPTGTTGTTTVVIQTPTTVTATETDIVTVTT 846

Query: 480 GRTGS 494
           G TG+
Sbjct: 847 GYTGT 851


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 24/66 (36%), Positives = 32/66 (48%)
 Frame = -1

Query: 484 RPAVAALMDTVPTVAMEVYRPLAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPP 305
           +P  A ++  VP+V     RP AVPV    +  A     P  A ++  VP V     +PP
Sbjct: 636 QPPAAPVVPEVPSVPQ---RP-AVPV----VPEAPSVPQPPAAPVVPEVPSVP----QPP 683

Query: 304 AVPVTP 287
           AVPV P
Sbjct: 684 AVPVVP 689


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = +3

Query: 327  TTLGTVFMRAATAGFPGSYAV*IRISVTGTASGRYTSIATVGTVSISAATAGRT 488
            TT GTV + A TAG      V   I  T T   + T+  TV  V  +A T   T
Sbjct: 898  TTSGTVEIVAPTAGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGTVTET 951



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = +3

Query: 327  TTLGTVFMRAATAGFPGSYAV*IRISVTGTASGRYTSIATVGTVSISAATAGRT 488
            TT GTV + A TAG      V   I  T T   + T+  TV  V  +A T   T
Sbjct: 968  TTSGTVEIVAPTAGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGTVTET 1021


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 230 TAPTVVMEVYHPPAVPVTLIQTQTAPDPIHRAVAALMDTVPTVMME-VYHLPAVPVT 63
           T P    +V+H  ++         AP+ +   +A L D +  +  E ++  PA P T
Sbjct: 35  TLPETTEDVFHLMSIDDLTKVKDNAPENLQTIIAVLWDKLEDLQKETLFDDPAAPTT 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,429
Number of Sequences: 5004
Number of extensions: 41084
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)