Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0757.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 29 2.1
03_06_0187 + 32209924-32210634 29 2.1
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160... 29 3.7
01_04_0036 - 15328741-15329868 28 4.9
02_05_0184 + 26543156-26544019 28 6.5
01_05_0038 + 17484046-17484288,17484540-17484674 28 6.5
08_01_0511 + 4459685-4459755,4461553-4463653,4463741-4463808,446... 27 8.6
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 27 8.6
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -3
Query: 251 AVAALMDTAPTVVMEVYHPPAVPVTLIQTQTAPDPIHRAVAALMDTVPTVMMEVYHLPAV 72
A+ + AP+ + PP+ P + AP P A AA + P+ LPA
Sbjct: 416 AITVMPPPAPSQQPQPPPPPSHPTPITSVAPAPPPPPPAAAAAAASQPSPQATKSPLPAT 475
Query: 71 PVT 63
P T
Sbjct: 476 PQT 478
>03_06_0187 + 32209924-32210634
Length = 236
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 490 PVRPAVAALMDTVPTVAMEVYRPLAVPV--TLIRIQTA*DPGNPAVAALMKTVPRVVMKM 317
P P V A+ T+P + P P T+ I T PG PAV + + T+P +
Sbjct: 76 PTIPGVPAVGPTIPAIPTIPGVPAVGPTIPTIPTIPTI--PGVPAVGSTIPTIPTIPGVP 133
Query: 316 YRPPAVPVTP 287
P +P P
Sbjct: 134 AVGPTIPTIP 143
>03_06_0407 -
33714563-33714636,33714966-33715152,33715943-33716093,
33716520-33716632,33717022-33717085,33717180-33717391,
33717540-33717621,33717811-33717866,33718004-33718072,
33718524-33718772,33718873-33719049,33719556-33719702,
33719794-33719926,33720093-33720307
Length = 642
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 224 PTVVMEVYHPPAVPVTLIQTQTAPDPIHRAVAALMDTVPTVMMEVYHLPAVPVTLIRIQT 45
PT + Y P VP+T++ T ++P+ HRA ++ Y P TL R+ T
Sbjct: 50 PTRLPADYFPDRVPITIVDTSSSPE--HRAKLIAECQAADAVVLTYACDR-PATLERLST 106
>01_04_0036 - 15328741-15329868
Length = 375
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +3
Query: 372 PGSYAV*IRISVTGTASGRYTSIATVGTVSISAATAGRTGSCVA*VESVLLELPVDD 542
PG+ V + ++ +GRYTS+ G VS A C ESVLL+ PV +
Sbjct: 274 PGTIVVHVGDALEILTNGRYTSVLHRGLVSRDAVRLSWVVFCEPPPESVLLQ-PVPE 329
>02_05_0184 + 26543156-26544019
Length = 287
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 124 SAATARCIGSGAV*V*ISVTGTAGG*YTSITTVGAVSISAATASVLDPALFEFESVLLEL 303
+AAT +C S + + T T+ A S AAT+SV + ALF+ +LL+L
Sbjct: 182 AAATDQCESSSSAVAAATATDAEAA---ESTSSAAASPCAATSSVEENALFDLPDLLLDL 238
>01_05_0038 + 17484046-17484288,17484540-17484674
Length = 125
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 532 RWMITSIHDCWNCIHKVLLPP 594
RW +TS D WN K LLPP
Sbjct: 84 RWKLTSCWDLWN--EKALLPP 102
>08_01_0511 +
4459685-4459755,4461553-4463653,4463741-4463808,
4465156-4465282,4465379-4465429
Length = 805
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 471 QHLWIQFQQSRWKCID 424
QHL I+F RWKC++
Sbjct: 596 QHLMIKFNAHRWKCLN 611
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +2
Query: 431 HFHRDCWNC--IHKCCYRRTYWILRCL 505
HF+ +CWNC CY W L+ L
Sbjct: 769 HFYCECWNCSLYPLLCYLGPTWFLQYL 795
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,146
Number of Sequences: 37544
Number of extensions: 304302
Number of successful extensions: 803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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