Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0757.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.13
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 31 0.71
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 30 1.2
SB_51003| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.7
SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5) 29 2.2
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 29 3.8
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38) 28 5.0
SB_6588| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 5.0
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 27 8.7
SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1) 27 8.7
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89) 27 8.7
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 27 8.7
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = +2
Query: 347 HESCYRRISWILRCLNSNQCYWN----CQWSIHFHRDCWNCIHKCCYRRTYWILR 499
H CYR + C + CY+ C + H+H C+ + CYR Y R
Sbjct: 13 HNRCYRHHHYCCYC-HHRYCYYRHHHYCWYRHHYHYPCYRHYYHRCYRHHYCCYR 66
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Frame = +3
Query: 3 RDESCYRRISWILRCLNSNQCYWN----CR*MIHFHHDCWNCIHKCCYRPMY 146
R CYR + C + CY+ C H+H+ C+ + CYR Y
Sbjct: 12 RHNRCYRHHHYCCYC-HHRYCYYRHHHYCWYRHHYHYPCYRHYYHRCYRHHY 62
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 96 HHDCWNCIHKCCYRPMYWIRRCLSLNQCNWNCRWMIHFHHDCWSCIHKCCYR 251
H+ C+ H CCY R C + + C + H+H+ C+ + CYR
Sbjct: 13 HNRCYRHHHYCCYCHH---RYCYYRH--HHYCWYRHHYHYPCYRHYYHRCYR 59
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 141 MYWIRRCLSLNQCNWNCRWMIHFHHDCWSCIHKCC 245
M + R C N C++NC H+ + C HKCC
Sbjct: 311 MQYYRGCAFANHCDFNC---THYINGSSDCNHKCC 342
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 45 CLNSNQCYWNCR*MIHFHHDCWNCIHKCC 131
C +N C +NC H+ + +C HKCC
Sbjct: 317 CAFANHCDFNC---THYINGSSDCNHKCC 342
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 386 CLNSNQCYWNCQWSIHFHRDCWNCIHKCC 472
C +N C +NC H+ +C HKCC
Sbjct: 317 CAFANHCDFNC---THYINGSSDCNHKCC 342
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = +3
Query: 12 SCYRRISWIL-RCLNSNQCYWNCR*MIHFHHDCWNCIHKCCYRPMYWIRRCLSLNQCNWN 188
+C W L R + + C CR + D C C +R + R ++ C
Sbjct: 76 TCKSTCPWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKST 131
Query: 189 CRWMIHFHHDCWSCIHKCCYR 251
CRW + D +C C +R
Sbjct: 132 CRWRLDRQADIHTCKSTCRWR 152
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = +3
Query: 12 SCYRRISWIL-RCLNSNQCYWNCR*MIHFHHDCWNCIHKCCYRPMYWIRRCLSLNQCNWN 188
+C W L R + + C CR + D C C +R + R ++ C
Sbjct: 93 TCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKST 148
Query: 189 CRWMIHFHHDCWSCIHKCCYR 251
CRW + D +C C +R
Sbjct: 149 CRWRLDRQADIHTCKSTCRWR 169
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Frame = +3
Query: 12 SCYRRISWIL-RCLNSNQCYWNCR*MIHFHHDCWNCIHKCCYRPMYWIRRCLSLNQCNWN 188
+C W L R + + C CR + D C C +R + R ++ C
Sbjct: 110 TCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKST 165
Query: 189 CRWMIHFHHDCWSCIHKC 242
CRW I+ D C C
Sbjct: 166 CRWRINRQADIHRCKSTC 183
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +3
Query: 12 SCYRRISWIL-RCLNSNQCYWNCR*MIHFHHDCWNCIHKCCYRPMYWIRRCLSLNQCNWN 188
+C W L R + + C CR + D C C +R I R +++C
Sbjct: 127 TCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----INRQADIHRCKST 182
Query: 189 CRWMI 203
CRW +
Sbjct: 183 CRWQL 187
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +3
Query: 117 IHKCCYRPMYWIRRCLSLNQCNWNCRWMIHFHHDCWSCIHKCCYR 251
IH C + + R ++ C CRW + D +C C +R
Sbjct: 74 IHTCKSTCPWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR 118
>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
Length = 889
Score = 30.3 bits (65), Expect = 1.2
Identities = 27/83 (32%), Positives = 35/83 (42%)
Frame = +1
Query: 13 AAIAGFPGSYAV*IRISVTGTAGR*YTSIMTVGTVSISAATARCIGSGAV*V*ISVTGTA 192
A + G PG + + G A TS V T SIS A + S V IS A
Sbjct: 417 APVFGQPGKPVASLGTGLFGQAETAETSTTAVSTQSISQAVSAPSSSTPSRVPISAAPPA 476
Query: 193 GG*YTSITTVGAVSISAATASVL 261
GG S ++ G S +T SV+
Sbjct: 477 GGGLFSGSSFGPASQPPSTGSVM 499
>SB_51003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 27.5 bits (58), Expect(2) = 1.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 344 LHESCYRRISWILRCLNSNQCYWNCQWSIHFHRDCWNCIHKCC 472
L+ +C+R W +C N+ C WS H+ D I+ C
Sbjct: 76 LYSACHRDRVWKYQCTNNPATRGRCSWS-HWVNDFDQLINYHC 117
Score = 21.0 bits (42), Expect(2) = 1.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 464 KCCYRRTYWILRC 502
KCC+R Y L C
Sbjct: 142 KCCHRHHYKRLHC 154
>SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5)
Length = 191
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/59 (25%), Positives = 20/59 (33%)
Frame = +3
Query: 87 IHFHHDCWNCIHKCCYRPMYWIRRCLSLNQCNWNCRWMIHFHHDCWSCIHKCCYRQCTG 263
+H CW C+ YR + SL R +H W + YR C G
Sbjct: 84 VHLPPLCWGCVRVFIYRHYGGVAYECSLTAIVLGLRASVHLPPLRWGRVRVFTYRHCVG 142
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Frame = +2
Query: 293 YWNCRWS----IHFHHDSWNCLHESCYRRISWILRC-LNSNQCYWNCQWSIHFHRDCWNC 457
YW W+ +H+ W Y R W ++ + W +H+ R W
Sbjct: 182 YWRTLWAYTMGVHYGRTLWAYTMGVHYGRTLWAYTMGVHYGRTLWAYTMGVHYGRTLWAY 241
Query: 458 IHKCCYRRTYW 490
Y RT W
Sbjct: 242 TMGVHYGRTLW 252
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +2
Query: 287 RCYWNCRWSIHFHHDSWNCLHESCYRRISWILRC-LNSNQCYWNCQWSIHFHRDCWNCIH 463
R W +H+ W Y R W ++ + W +H+ R W
Sbjct: 197 RTLWAYTMGVHYGRTLWAYTMGVHYGRTLWAYTMGVHYGRTLWAYTMGVHYGRTLWAYTM 256
Query: 464 KCCYRRTYW 490
Y RT W
Sbjct: 257 GVHYGRTLW 265
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +2
Query: 287 RCYWNCRWSIHFHHDSWNCLHESCYRRISWILRC-LNSNQCYWNCQWSIHFHRDCWNCIH 463
R W +H+ W Y R W ++ + W +H+ R W
Sbjct: 210 RTLWAYTMGVHYGRTLWAYTMGVHYGRTLWAYTMGVHYGRTLWAYTMGVHYGRTLWAYTM 269
Query: 464 KCCYRRTYW 490
Y RT W
Sbjct: 270 GVHYGRTLW 278
>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = +3
Query: 45 CLNSNQC-YWNCR*MIHFHHDC--WNCIHK-CCYRPMYWIR---RCLSLNQCNWNCRWMI 203
C S+Q + +C HF H C C + C + ++ + C + + C+ +C W
Sbjct: 49 CTMSDQTDFSSCSQSCHFLHSCPGMTCTGRDVCDQKCFFGKCDMSCHATDLCSQSCVWES 108
Query: 204 HFHHDCWSCIHKCCYRQCT 260
H H +C + C++ C+
Sbjct: 109 HCH--ALTCTARICHQICS 125
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = -1
Query: 475 VAALMDTVPTVAMEVY---RPLAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPP 305
V +DT+P V + R + P TL R+ T D P V + T+PRVV ++ P
Sbjct: 170 VGTRLDTLPRVVTRLDTLPRVVTRPDTLPRVVTCLDT-LPRVGTRLDTLPRVVTRLDTLP 228
Query: 304 AVPVTPIQT 278
V VT + T
Sbjct: 229 RV-VTRLDT 236
Score = 27.9 bits (59), Expect = 6.6
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = -1
Query: 499 TQDPVRPAVAALMDTVPTVAMEVYR-PLAVPV--TLIRIQTA*DPGNPAVAALMKTVPRV 329
T+ P V +DT+P V + P V TL R+ T D P V + T+PRV
Sbjct: 192 TRPDTLPRVVTCLDTLPRVGTRLDTLPRVVTRLDTLPRVVTRLDT-LPRVVTRLDTLPRV 250
Query: 328 VMKMYRPPAVPVTPIQT 278
V ++ P V VT + T
Sbjct: 251 VTRLDTLPRV-VTRLDT 266
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -1
Query: 481 PAVAALMDTVPTVAME---VYRPLAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYR 311
P V +DT+P V + R + TL R+ T D P V + T+PRVV ++
Sbjct: 178 PRVVTRLDTLPRVVTRPDTLPRVVTCLDTLPRVGTRLDT-LPRVVTRLDTLPRVVTRLDT 236
Query: 310 PPAVPVTPIQT 278
P V VT + T
Sbjct: 237 LPRV-VTRLDT 246
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = -1
Query: 481 PAVAALMDTVPTVAMEVYRPLAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPA 302
P V +DT+P V V R +P + R+ T P V + T+PRVV ++ P
Sbjct: 376 PRVGTRLDTLPRV---VTRLDTLPRVVTRLDTL-----PRVGTRLDTLPRVVTRLDTLPR 427
Query: 301 VPVTPIQT 278
V VT + T
Sbjct: 428 V-VTRLDT 434
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = -1
Query: 481 PAVAALMDTVPTVAMEVYRPLAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPA 302
P V +DT+P V V R +P + R+ T P V + T+PRVV ++ P
Sbjct: 486 PRVVTRLDTLPRV---VTRLDTLPRVVTRLDTL-----PRVGTRLDTLPRVVTRLDTLPR 537
Query: 301 VPVTPIQT 278
V VT + T
Sbjct: 538 V-VTRLDT 544
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = -1
Query: 481 PAVAALMDTVPTVAMEVYRPLAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPA 302
P V +DT+P V V R +P + R+ T P V + T+PRVV ++ P
Sbjct: 516 PRVGTRLDTLPRV---VTRLDTLPRVVTRLDTL-----PRVVTRLDTLPRVVTRLDTLPR 567
Query: 301 VPVTPIQT 278
V VT + T
Sbjct: 568 V-VTRLDT 574
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = -1
Query: 481 PAVAALMDTVPTVAMEVYRPLAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPA 302
P V +DT+P V V R +P + R+ T P V + T+PRVV ++ P
Sbjct: 546 PRVVTRLDTLPRV---VTRLDTLPRVVTRLDTL-----PRVGTRLDTLPRVVTRLDTLPR 597
Query: 301 VPVTPIQT 278
V VT + T
Sbjct: 598 V-VTRLDT 604
>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
Length = 667
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 216 DCWSCIHKCCYRQCTGSC 269
DCW KCC CT C
Sbjct: 153 DCWDSDKKCCDNGCTSVC 170
>SB_6588| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 355
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 395 SNQCYWNCQWSIHFHRDCWNCIHKCCYRRTY 487
S Q Y +W+ H+ C N I CC RTY
Sbjct: 249 SYQVYRAIKWT-HYLNSCLNPIIYCCLNRTY 278
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/68 (35%), Positives = 31/68 (45%)
Frame = -1
Query: 487 VRPAVAALMDTVPTVAMEVYRPLAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRP 308
V PAV ++ VP V V P VP + I A PAV ++ VP VV +
Sbjct: 114 VVPAVPEIVPAVPEVVPAV--PEIVPA-VPEIVPAVPEIVPAVPEIVPAVPEVVPAVPEV 170
Query: 307 PAVPVTPI 284
AVP P+
Sbjct: 171 VAVPEPPV 178
>SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)
Length = 338
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 227 APTVVMEVYHPPAVPVTLIQTQTAPDPIH 141
AP V E++HPP V V Q P+H
Sbjct: 4 APIVAPEIHHPPQVVVHTPYEQQQLTPVH 32
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 58 ISVTGTAGR*YTSIMTVGTVSISAATARCIGSGAV*V*ISVTGTAGG*YTSITTVGAVSI 237
++ T TA T+ T + + ATA + ++ T TA T+ TV
Sbjct: 322 VTTTTTATATATTTATATATTTATATATATATATATATVTATATATATVTATVTVTVTVT 381
Query: 238 SAATASV 258
+ ATA+V
Sbjct: 382 ATATATV 388
>SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)
Length = 724
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +2
Query: 374 WILRCLNSNQCYWNCQWSIHFHRDCWNCIH 463
W+++ + N CY +++ F C +C H
Sbjct: 601 WLIKMVKHNVCYKRDSYALFFASPCTSCRH 630
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Frame = +2
Query: 293 YWNCRWS----IHFHHDSWNCLHESCYRRISWILRC-LNSNQCYWNCQWSIHFHRDCWNC 457
YW W+ +H+ W Y R W ++ + W +H+ R W
Sbjct: 57 YWRTLWAYTMGVHYGRTLWAYTIGVHYGRTLWAYTMGVHYGRTLWAYTMGVHYWRTLWAY 116
Query: 458 IHKCCYRRTYW 490
Y RT W
Sbjct: 117 TIGVHYWRTLW 127
>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -1
Query: 454 VPTVAMEVYRPLAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPAVPVTPIQT 278
VP V + P +PV ++QT D P VP+V + P +PV +QT
Sbjct: 366 VPKVQTTIDMPGPIPVP--KVQTTIDMPGPIDMPDPTPVPKVQTTIDMPDPIPVPKVQT 422
>SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 344 LHESCYRRISWILRCLNSNQCYWNCQWSIHFHRDCWNCIHKCC 472
L+ +C+R W +C N+ C WS H+ D I+ C
Sbjct: 251 LYRACHRDRVWKYQCTNNPATRGRCSWS-HWVNDFDQLINYHC 292
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,157,852
Number of Sequences: 59808
Number of extensions: 344169
Number of successful extensions: 1052
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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