Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0757.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 31 0.82
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 1.9
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 1.9
U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical pr... 28 4.4
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z31590-9|CAA83467.2| 581|Caenorhabditis elegans Hypothetical pr... 27 7.7
AL032660-3|CAA21753.2| 581|Caenorhabditis elegans Hypothetical ... 27 7.7
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 30.7 bits (66), Expect = 0.82
Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Frame = -3
Query: 236 MDTAPTVVMEVYHPPAVPVTLIQTQTAP-DPIHRAVAALMDTVPTVMMEVYHLPAVPVTL 60
M + PT + P P T+ T T P P T PT M P P T+
Sbjct: 158 MKSTPTTPTTIKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTM 217
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -3
Query: 230 TAPTVVMEVYHPPAVPVTLIQTQTAP-DPIHRAVAALMDTVPTVMMEVYHLPAVPVTL 60
T PT + P P T+ T T P P T PT M P P T+
Sbjct: 199 TTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTM 256
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -3
Query: 230 TAPTVVMEVYHPPAVPVTLIQTQTAP-DPIHRAVAALMDTVPTVMMEVYHLPAVPVTL 60
T PT + P P T+ T T P P T PT M P P T+
Sbjct: 287 TTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTM 344
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -3
Query: 230 TAPTVVMEVYHPPAVPVTLIQTQTAP-DPIHRAVAALMDTVPTVMMEVYHLPAVPVTL 60
T PT + P P T+ T T P P T PT M P P T+
Sbjct: 326 TTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTM 383
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -3
Query: 230 TAPTVVMEVYHPPAVPVTLIQTQTAP-DPIHRAVAALMDTVPTVMMEVYHLPAVPVTL 60
T PT + P P T+ T T P P T PT M P P T+
Sbjct: 274 TTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTM 331
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/57 (28%), Positives = 19/57 (33%)
Frame = -3
Query: 230 TAPTVVMEVYHPPAVPVTLIQTQTAPDPIHRAVAALMDTVPTVMMEVYHLPAVPVTL 60
T PT + P P T+ T T P T PT M P P T+
Sbjct: 365 TTPTTMKSTPTTPTTPTTMKSTPTTPTT--PTTMKSTPTTPTTMKSTPTTPTTPTTM 419
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -3
Query: 230 TAPTVVMEVYHPPAVPVTLIQTQTAPD-PIHRAVAALMDTVPT 105
TAP V PP +L+ T T P P+ V TVPT
Sbjct: 553 TAPPVTTPTSQPPVTTTSLLTTLTTPTVPVTTTVVPSSATVPT 595
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -3
Query: 230 TAPTVVMEVYHPPAVPVTLIQTQTAPD-PIHRAVAALMDTVPT 105
TAP V PP +L+ T T P P+ V TVPT
Sbjct: 609 TAPPVTTPTSQPPVTTTSLLTTLTTPTVPVTTTVVPSSATVPT 651
>U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical
protein F32A5.2b protein.
Length = 859
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +3
Query: 108 WNCIHKCCYRPMYWIRRCLSLNQCNWNCRWMI-HFHHDCWSCIHKCCYRQCT 260
++C+ C W R S+ +C N WM+ + C +C K R T
Sbjct: 34 FHCLKNGCCDHHEWCRFWASVGECKTNADWMVDNCQLACNTCTRKNVIRPAT 85
>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
protein F32A5.2a protein.
Length = 1000
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +3
Query: 108 WNCIHKCCYRPMYWIRRCLSLNQCNWNCRWMI-HFHHDCWSCIHKCCYRQCT 260
++C+ C W R S+ +C N WM+ + C +C K R T
Sbjct: 34 FHCLKNGCCDHHEWCRFWASVGECKTNADWMVDNCQLACNTCTRKNVIRPAT 85
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
protein ZK287.4 protein.
Length = 1208
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 224 PTVVMEVYHPPAVPVTLIQTQTAPDPIHRAVAALMDTVPTVMMEVYHLP 78
PT++ E H +P T T P + ++LM+T ++E H+P
Sbjct: 390 PTLIYEP-HGETLPTLNPPTTTTPSIVDHVFSSLMNTQQQKLVEFVHVP 437
>Z31590-9|CAA83467.2| 581|Caenorhabditis elegans Hypothetical
protein R01H10.1 protein.
Length = 581
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 328 VMKMYRPPAVPVTPIQTQTAQD 263
V K+++P A+PV P++T T ++
Sbjct: 301 VDKIFQPAALPVNPVETDTTKE 322
>AL032660-3|CAA21753.2| 581|Caenorhabditis elegans Hypothetical
protein R01H10.1 protein.
Length = 581
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 328 VMKMYRPPAVPVTPIQTQTAQD 263
V K+++P A+PV P++T T ++
Sbjct: 301 VDKIFQPAALPVNPVETDTTKE 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,915,727
Number of Sequences: 27780
Number of extensions: 251172
Number of successful extensions: 907
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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