Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0757.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    28   0.080
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    28   0.080
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.24 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.24 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.0  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   6.9  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 27.9 bits (59), Expect = 0.080
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 105 CWNCIHKCCYRPMYWIRRCLS-LNQC 179
           C NCIH   +  ++W+  C S +N C
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPC 60



 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 446 CWNCIHKCCYRRTYWILRCLS*IS 517
           C NCIH   +   +W+  C S I+
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAIN 58


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 0.080
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 105 CWNCIHKCCYRPMYWIRRCLS-LNQC 179
           C NCIH   +  ++W+  C S +N C
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPC 508



 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 446 CWNCIHKCCYRRTYWILRCLS*IS 517
           C NCIH   +   +W+  C S I+
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAIN 506


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 415  VPVTLIRIQTA*D-PGNPAVAALMKTVPRVVMKMYRPPAVP 296
            VP T+   QT  D PG+PA   ++ + P+ +   + PP  P
Sbjct: 1200 VPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISWLPPLEP 1240


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 415  VPVTLIRIQTA*D-PGNPAVAALMKTVPRVVMKMYRPPAVP 296
            VP T+   QT  D PG+PA   ++ + P+ +   + PP  P
Sbjct: 1196 VPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISWLPPLEP 1236


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +2

Query: 320 FHHDSWNCLHESCYRRISWILRCLNSN---QCYW--NCQWSIHFHRDCWNCIHKCC 472
           +H+++  C  E C     +  R +  N   QC +  NC+  ++  R C  C  K C
Sbjct: 197 YHYNALTC--EGCK---GFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKC 247


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = +2

Query: 401 QCYW--NCQWSIHFHRDCWNCIHKCC 472
           QC +  NC+  ++  R C  C  K C
Sbjct: 19  QCKYGNNCEIDMYMRRKCQECRLKKC 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,476
Number of Sequences: 438
Number of extensions: 2955
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)