Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0756.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0001596899 Cluster: hypothetical protein LOC90120; n...    35   1.3  
UniRef50_P05687 Cluster: Chorion class high-cysteine HCA protein...    34   2.2  
UniRef50_Q7UKG0 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q22NA0 Cluster: ABC transporter family protein; n=1; Te...    33   5.1  
UniRef50_Q7YWV7 Cluster: Putative uncharacterized protein; n=2; ...    33   6.7  
UniRef50_Q17641 Cluster: Putative uncharacterized protein; n=11;...    33   6.7  
UniRef50_Q4GYI8 Cluster: Putative uncharacterized protein; n=1; ...    32   8.9  
UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    32   8.9  
UniRef50_O45834 Cluster: Putative uncharacterized protein; n=2; ...    32   8.9  

>UniRef50_UPI0001596899 Cluster: hypothetical protein LOC90120; n=1;
           Homo sapiens|Rep: hypothetical protein LOC90120 - Homo
           sapiens
          Length = 135

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 335 SCCGRTAASCRCCGCSWAA 391
           SCC  ++ASCRCC C WAA
Sbjct: 111 SCCA-SSASCRCCCCCWAA 128


>UniRef50_P05687 Cluster: Chorion class high-cysteine HCA protein 12
           precursor; n=1; Bombyx mori|Rep: Chorion class
           high-cysteine HCA protein 12 precursor - Bombyx mori
           (Silk moth)
          Length = 124

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 302 ACRRGCRTTAGSCCGRTAASCRCCGC 379
           AC  GC +  G CCG     C  CGC
Sbjct: 75  ACASGCVSICGRCCGCGCGGCGGCGC 100


>UniRef50_Q7UKG0 Cluster: Putative uncharacterized protein; n=1;
           Pirellula sp.|Rep: Putative uncharacterized protein -
           Rhodopirellula baltica
          Length = 200

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 275 IKLGSVLSTACRRGCRTTAGSCCGRTAASCRCCGCSWA 388
           I+L  ++ T C  GC T     CG   +SC  CG + A
Sbjct: 156 IELSDLMQTGCGPGCGTADAGGCGGGCSSCSGCGIASA 193


>UniRef50_Q22NA0 Cluster: ABC transporter family protein; n=1;
           Tetrahymena thermophila SB210|Rep: ABC transporter
           family protein - Tetrahymena thermophila SB210
          Length = 1858

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = -3

Query: 239 NFAYFIKLYTSMLHEQI*FKFSTMSFNFSLCFYI*LNKAI*TVYTCNVNYPCFYFNSVFY 60
           N+ Y +K Y  +  EQ+       ++N+ LC  I +NKA+  VY    +Y  F+ N+  Y
Sbjct: 122 NYQYPVKRYQDV--EQVNKHVKDPNYNYDLCLGIQMNKALNNVY----DYTLFFNNTGKY 175

Query: 59  F---PIKKCVAVICGSFNKRE 6
           F   P     A     F+KRE
Sbjct: 176 FFEMPKTLTAAKFDYMFDKRE 196


>UniRef50_Q7YWV7 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 212

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = +2

Query: 305 CRRGCRTTAGSCCGRTAASCR--CCGC 379
           CRR C      CC R    CR  CCGC
Sbjct: 97  CRRCCTCCRTCCCTRCCTCCRPCCCGC 123


>UniRef50_Q17641 Cluster: Putative uncharacterized protein; n=11;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 197

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = +2

Query: 305 CRRGCRTTAGSCCGRTAASCR--CCGC 379
           CRR C      CC R    CR  CCGC
Sbjct: 97  CRRCCTCCRTCCCTRCCTCCRPCCCGC 123


>UniRef50_Q4GYI8 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 161

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 317 CRTTAGSCCGRTAASCRCCGC 379
           CRTT  SC       C CCGC
Sbjct: 45  CRTTVVSCTSAFTTDCYCCGC 65


>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = -3

Query: 290 LNQV*FFK**NLKNTVHNFAYFIKLYTSMLHEQI*FKFSTMSF---NFSLCFYI*LNKAI 120
           +N +   K  N     +N  +FIK Y + L+    FK++   +   N     YI  N  I
Sbjct: 565 INNIIIKKYLNFYKYTYNKLFFIKKYNNFLYLYEIFKYNWYKYLLLNNKYNLYIIYNNYI 624

Query: 119 *TVYTCNVNYPCFYFNSVFY 60
             +Y  N+N   ++  ++FY
Sbjct: 625 KYLYKYNININLYFIKNLFY 644


>UniRef50_O45834 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 90

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
 Frame = +2

Query: 194 VRATSTYII**NKQNCVLYFLDFIT*KIKLGSVLSTACRRGCRTTAGSCCGRTA------ 355
           +  T + ++  N++  +    D +  +  LG ++    + GC      CCG T       
Sbjct: 17  ISTTFSNVVQGNEETALDSTYDMVPGEGVLGQLIRAKRQWGCGCDCWGCCGPTPDPAATP 76

Query: 356 --ASCRCCGCSW 385
              +C CCGC W
Sbjct: 77  APCNCGCCGCGW 88


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 371,921,640
Number of Sequences: 1657284
Number of extensions: 5524810
Number of successful extensions: 13639
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13555
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)