Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0756.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0582 + 30392297-30392677,30393786-30394039,30394175-303942...    29   2.1  
07_03_1144 + 24331104-24331292,24331387-24331611,24332133-243325...    28   4.9  
01_06_0087 + 26299692-26299971,26301721-26301933,26302027-263024...    27   8.6  

>01_06_0582 +
           30392297-30392677,30393786-30394039,30394175-30394298,
           30394484-30394588,30395913-30396035
          Length = 328

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 272 KIKLGSVLSTACRRGCRTTAGSCCGRTAASCRC 370
           KIK    L  A +RG R   GS  G +AA C C
Sbjct: 135 KIKQKEALGVAEKRGGRRGTGSVIGSSAAGCVC 167


>07_03_1144 +
           24331104-24331292,24331387-24331611,24332133-24332521,
           24332762-24332856,24333300-24333673
          Length = 423

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 290 VLSTACRRGCRTTAGSCCGRTAASCRCCGCSWAAFLAVAAISISPICS 433
           +L  A R  CR TA   C  ++ +CR C       LA A ++ SP+ S
Sbjct: 368 LLQLAARFACRYTARCLCRISSLTCRRCSTRRLRDLA-AVVTSSPLPS 414


>01_06_0087 +
           26299692-26299971,26301721-26301933,26302027-26302464,
           26304500-26304708
          Length = 379

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 287 SVLSTACRRGCRTTAGSCCGRTAASCRCCGCS 382
           S+     + G     GSCCG  +  C   GC+
Sbjct: 302 SIFQAPGKLGFTNALGSCCGNQSVPCGKAGCT 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,727,746
Number of Sequences: 37544
Number of extensions: 140047
Number of successful extensions: 294
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)