Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0756.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 33 0.20
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 33 0.20
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 33 0.20
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z81132-8|CAB03429.1| 90|Caenorhabditis elegans Hypothetical pr... 32 0.27
Z81132-7|CAB03428.1| 86|Caenorhabditis elegans Hypothetical pr... 31 0.47
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 31 0.62
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 31 0.62
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 27 7.7
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 27 7.7
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +2
Query: 305 CRRGCRTTAGSCCGRTAASCR--CCGC 379
CRR C CC R CR CCGC
Sbjct: 97 CRRCCTCCRTCCCTRCCTCCRPCCCGC 123
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTAASCRC-CGC 379
T CR C T +CC C C CGC
Sbjct: 102 TCCRTCCCTRCCTCCRPCCCGCGCGCGC 129
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +2
Query: 305 CRRGCRTTAGSCCGRTAASCR--CCGC 379
CRR C CC R CR CCGC
Sbjct: 95 CRRCCTCCRTCCCTRCCTCCRPCCCGC 121
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTAASCRCCGC 379
T C C T CC C CCGC
Sbjct: 104 TCCCTRCCTCCRPCCCGCGCGCGCCGC 130
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTAASCRC-CGC 379
T CR C T +CC C C CGC
Sbjct: 100 TCCRTCCCTRCCTCCRPCCCGCGCGCGC 127
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +2
Query: 305 CRRGCRTTAGSCCGRTAASCR--CCGC 379
CRR C CC R CR CCGC
Sbjct: 96 CRRCCTCCRTCCCTRCCTCCRPCCCGC 122
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTAASCRCCGC 379
T C C T CC C CCGC
Sbjct: 105 TCCCTRCCTCCRPCCCGCGCGCGCCGC 131
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTAASCRC-CGC 379
T CR C T +CC C C CGC
Sbjct: 101 TCCRTCCCTRCCTCCRPCCCGCGCGCGC 128
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +2
Query: 305 CRRGCRTTAGSCCGRTAASCR--CCGC 379
CRR C CC R CR CCGC
Sbjct: 96 CRRCCTCCRTCCCTRCCTCCRPCCCGC 122
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTAASCRCCGC 379
T C C T CC C CCGC
Sbjct: 105 TCCCTRCCTCCRPCCCGCGCGCGCCGC 131
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTAASCRC-CGC 379
T CR C T +CC C C CGC
Sbjct: 101 TCCRTCCCTRCCTCCRPCCCGCGCGCGC 128
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +2
Query: 305 CRRGCRTTAGSCCGRTAASCR--CCGC 379
CRR C CC R CR CCGC
Sbjct: 97 CRRCCTCCRTCCCTRCCTCCRPCCCGC 123
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTA--ASCRCCGC 379
T CR C T +CC C CCGC
Sbjct: 102 TCCRTCCCTRCCTCCRPCCCGCGCGCCGC 130
>Z81132-8|CAB03429.1| 90|Caenorhabditis elegans Hypothetical
protein T26E4.10 protein.
Length = 90
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Frame = +2
Query: 194 VRATSTYII**NKQNCVLYFLDFIT*KIKLGSVLSTACRRGCRTTAGSCCGRTA------ 355
+ T + ++ N++ + D + + LG ++ + GC CCG T
Sbjct: 17 ISTTFSNVVQGNEETALDSTYDMVPGEGVLGQLIRAKRQWGCGCDCWGCCGPTPDPAATP 76
Query: 356 --ASCRCCGCSW 385
+C CCGC W
Sbjct: 77 APCNCGCCGCGW 88
>Z81132-7|CAB03428.1| 86|Caenorhabditis elegans Hypothetical
protein T26E4.9 protein.
Length = 86
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Frame = +2
Query: 281 LGSVLSTACRRGCRTTAGSCCGRTA--------ASCRCCGCSW 385
LG ++ + GC CCG T +C CCGC W
Sbjct: 42 LGQLIRAKRQWGCGCDCWGCCGPTPDPAATPAPCNCGCCGCGW 84
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTAASCRCCGC 379
T C C T CC C CCGC
Sbjct: 90 TCCCTRCCTCCRPCCCGCGCGCGCCGC 116
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTAASCRC-CGC 379
T CR C T +CC C C CGC
Sbjct: 86 TCCRTCCCTRCCTCCRPCCCGCGCGCGC 113
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +2
Query: 305 CRRGCRTTAGSCCGRTAASCR--CCGC 379
C CRT CC R CR CCGC
Sbjct: 84 CCTCCRTC---CCTRCCTCCRPCCCGC 107
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTAASCRCCGC 379
T C C T CC C CCGC
Sbjct: 93 TCCCTRCCTCCRPCCCGCGCGCGCCGC 119
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTAASCRC-CGC 379
T CR C T +CC C C CGC
Sbjct: 89 TCCRTCCCTRCCTCCRPCCCGCGCGCGC 116
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +2
Query: 305 CRRGCRTTAGSCCGRTAASCR--CCGC 379
C CRT CC R CR CCGC
Sbjct: 87 CCTCCRTC---CCTRCCTCCRPCCCGC 110
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 299 TACRRGCRTTAGSCCGRTAASCRC-CGC 379
T CR C T +CC C C CGC
Sbjct: 84 TCCRTCCCTRCCTCCRPCCCGCGCGCGC 111
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +2
Query: 305 CRRGCRTTAGSCCGRTAASCR--CCGC 379
C CRT CC R CR CCGC
Sbjct: 82 CCTCCRTC---CCTRCCTCCRPCCCGC 105
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 197 RATSTYII**NKQNCVLYFLDFIT*KIKLGSVLSTACRRGCRTTAGSCCG 346
RA S +I + F D T K + G LS A R+ C + + SCCG
Sbjct: 5 RAASILLIAVLALSSTFVFADEETVKNETGLALSRAKRQCCSSNSNSCCG 54
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 239 CVLYFLDFIT*KIKLGSVLSTACRRGCRTTAGSCCG-RTAASCRC 370
C L+ L ++ + +GS L C R AG G +T+ CRC
Sbjct: 7 CFLFLLISLSKSLHIGSCLGLICGRNGHCHAGPVNGTQTSYWCRC 51
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 239 CVLYFLDFIT*KIKLGSVLSTACRRGCRTTAGSCCG-RTAASCRC 370
C L+ L ++ + +GS L C R AG G +T+ CRC
Sbjct: 7 CFLFLLISLSKSLHIGSCLGLICGRNGHCHAGPVNGTQTSYWCRC 51
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,032,426
Number of Sequences: 27780
Number of extensions: 148788
Number of successful extensions: 499
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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