Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0756.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11650.1 68416.m01428 harpin-induced family protein / HIN1 fa...    29   1.8  
At5g06380.1 68418.m00714 expressed protein ; expression supporte...    29   2.4  

>At3g11650.1 68416.m01428 harpin-induced family protein / HIN1
           family protein / harpin-responsive family protein /
           NDR1/HIN1-like protein 2 identical to NDR1/HIN1-Like
           protein 2 (GP:9502174) [Arabidopsis thaliana]; similar
           to hin1 GB:CAA68848 [Nicotiana tabacum]
          Length = 240

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 332 GSCCGRTAASC-RCCGCSWAAFLAVAAISISPICSTFSL 445
           G CC     SC RCCGC   + +    I+++ I    +L
Sbjct: 33  GCCCFSCLGSCLRCCGCCILSLICNILIAVAVILGVAAL 71


>At5g06380.1 68418.m00714 expressed protein ; expression supported
           by MPSS
          Length = 146

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 293 LSTACRRGCRTTAGSCCGRTAASCRC-CGCSWAAFLAVAAISI 418
           LST    G  +T   CCG T ASC   C C+  + + +  +++
Sbjct: 11  LSTPSLCGGGSTTAECCGGTTASCAALCLCAPCSVVNLVVLAV 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,240,338
Number of Sequences: 28952
Number of extensions: 125623
Number of successful extensions: 262
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)