Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0755.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.0  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   3.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = -2

Query: 196 TPGQSGSPCDCQ---SPHLPSGCRRRWISPRRYHP 101
           TP     P + Q     H P+G  + WI+  RY P
Sbjct: 777 TPFDPDVPIELQIQKQSHTPNGIVKTWIAHDRYLP 811


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 494 LGIRVXPPTRQYRGFE 447
           L IR   P+RQ+ GFE
Sbjct: 78  LNIRPGQPSRQHAGFE 93


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 29  VLENEMYLSLTSAAVPSTCPSLP 97
           +L   M+  L S  +PST  +LP
Sbjct: 274 LLSQTMFFLLISEIIPSTSLALP 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,711
Number of Sequences: 438
Number of extensions: 3183
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)