Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0754.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.4  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    22   4.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.3  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   9.7  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   9.7  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   9.7  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 564 ED*ATVLTKVMLIQNPCATGARKRPVAKGATL 469
           ED   ++     + +PCATG+   P   G+ L
Sbjct: 22  EDDVLLVKSEPQLHSPCATGSNGLPAGAGSNL 53


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 153 SLPLFES-IYVPCRDLGSCDQPKSDHASRDAYVQHHD 260
           S+P+ E  + V C ++G  D PK    S   Y  HH+
Sbjct: 60  SVPVIERRLEVDC-NIGGYDFPKDTFLSLFIYGMHHN 95


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 232 DAWSDFGWSQLP 197
           D WS F W+ LP
Sbjct: 915 DQWSSFYWNLLP 926


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 232 DAWSDFGWSQLP 197
           D WS F W+ LP
Sbjct: 915 DQWSSFYWNLLP 926


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +1

Query: 589 WEAPXIPV---NLTGLPYPYTQQKNALTLXKFFP 681
           W  P IP+    L  + YP  Q+K  + L  + P
Sbjct: 544 WIHPWIPLLDTRLQAIIYPIIQEKLGVALTNWHP 577


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 140 LGSDATLFNYVAN 102
           +GSD +L+N+ AN
Sbjct: 160 VGSDGSLYNHTAN 172


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 147 GVSLPLFESIYVPCRD 194
           G++ P+F  +YV C D
Sbjct: 149 GLTSPIFNLVYVYCCD 164


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 275 PKINWIVMLYISIARCVV*LRLVAAPEV 192
           PKI  +V+L+ ++ R    L  V AP++
Sbjct: 76  PKIKRMVLLHKTLVRVAKSLNQVFAPQL 103


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -1

Query: 356 YWVAQDSSYKYFEVI 312
           Y+V ++  YKY++++
Sbjct: 151 YFVQRNQEYKYYQIL 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,777
Number of Sequences: 336
Number of extensions: 3282
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)