Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0754.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    97   3e-21
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    97   3e-21
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   7.9  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   7.9  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 49/91 (53%), Positives = 59/91 (64%)
 Frame = -1

Query: 527 FRIRVRLVPASVQLLRVPLYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWV 348
           +RIRVR       + +   YGKP   GVN LK  R+ +  AEE           L+SYWV
Sbjct: 62  YRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWV 121

Query: 347 AQDSSYKYFEVILVDPSHKAIRRDPKINWIV 255
            QD++YK+FEVILVDPSHKAIRRDP+INWIV
Sbjct: 122 NQDATYKFFEVILVDPSHKAIRRDPRINWIV 152



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 31/50 (62%), Positives = 37/50 (74%)
 Frame = -3

Query: 249 VHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100
           VHKHRE RGLTS G+ SRG+GKGHR++ +    + A WLR NTL LRR R
Sbjct: 155 VHKHRESRGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = -2

Query: 589 RPTRPDKARRLGYRANQGYV 530
           RP+RPDKARRLGY+A QGYV
Sbjct: 41  RPSRPDKARRLGYKAKQGYV 60


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 49/91 (53%), Positives = 59/91 (64%)
 Frame = -1

Query: 527 FRIRVRLVPASVQLLRVPLYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWV 348
           +RIRVR       + +   YGKP   GVN LK  R+ +  AEE           L+SYWV
Sbjct: 62  YRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWV 121

Query: 347 AQDSSYKYFEVILVDPSHKAIRRDPKINWIV 255
            QD++YK+FEVILVDPSHKAIRRDP+INWIV
Sbjct: 122 NQDATYKFFEVILVDPSHKAIRRDPRINWIV 152



 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 32/50 (64%), Positives = 37/50 (74%)
 Frame = -3

Query: 249 VHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100
           VHKHRE RGLTS G+ SRG+GKGHRY+ +    + A WLR NTL LRR R
Sbjct: 155 VHKHRESRGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = -2

Query: 589 RPTRPDKARRLGYRANQGYV 530
           RP+RPDKARRLGY+A QGYV
Sbjct: 41  RPSRPDKARRLGYKAKQGYV 60


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/37 (18%), Positives = 24/37 (64%)
 Frame = +1

Query: 427 VGFNWLTPWLLGLP*SGTLSNWTLAGTSRTRILNQHN 537
           V + W++  ++G+    ++ +WT++G+   ++ ++H+
Sbjct: 109 VYWTWISDSVIGMVTDTSVFHWTVSGSDPVKMFDRHS 145


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 95  HLSKTVSDFPFAYFCMQMESQWVNKILLL 9
           HL      FP+ YFC+ +    ++++ +L
Sbjct: 178 HLFYVFQSFPWTYFCLAVSGTCISELYVL 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,607
Number of Sequences: 5004
Number of extensions: 54480
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)