Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0754.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 93 2e-19
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 93 2e-19
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.008
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 31 1.2
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 30 1.5
03_03_0223 - 15570099-15570226,15572948-15573055,15573295-15573550 29 2.7
02_02_0445 - 10351483-10351606,10351987-10353170 29 2.7
01_01_0652 + 4975091-4975585 29 2.7
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 29 3.5
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 28 8.2
06_01_1010 + 7866158-7866661 28 8.2
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 28 8.2
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 93.1 bits (221), Expect = 2e-19
Identities = 44/90 (48%), Positives = 59/90 (65%)
Frame = -1
Query: 527 FRIRVRLVPASVQLLRVPLYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWV 348
+R+RVR + + +YGKPK G+ QLK RN +S+AEE L+SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 347 AQDSSYKYFEVILVDPSHKAIRRDPKINWI 258
+DS+YKYFE+ILVD +H AIR DP+INW+
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWL 256
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/51 (60%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = -3
Query: 249 VHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100
VHKHRE+RGLTSAG+ RGL GKGH + + + SRRA W R T+ LRR R
Sbjct: 260 VHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKRNQTVSLRRYR 309
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -2
Query: 595 LPRPTRPDKARRLGYRANQGYV 530
L RPTRPDKARRLGY+A QGYV
Sbjct: 144 LTRPTRPDKARRLGYKAKQGYV 165
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 93.1 bits (221), Expect = 2e-19
Identities = 44/90 (48%), Positives = 59/90 (65%)
Frame = -1
Query: 527 FRIRVRLVPASVQLLRVPLYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWV 348
+R+RVR + + +YGKPK G+ QLK RN +S+AEE L+SYWV
Sbjct: 62 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 121
Query: 347 AQDSSYKYFEVILVDPSHKAIRRDPKINWI 258
+DS+YKYFE+ILVD +H AIR DP+INW+
Sbjct: 122 NEDSTYKYFEIILVDVAHSAIRNDPRINWL 151
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/51 (60%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = -3
Query: 249 VHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100
VHKHRE+RGLTSAG+ RGL GKGH + + + SRRA W R T+ LRR R
Sbjct: 155 VHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKRNQTVSLRRYR 204
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -2
Query: 595 LPRPTRPDKARRLGYRANQGYV 530
L RPTRPDKARRLGY+A QGYV
Sbjct: 39 LTRPTRPDKARRLGYKAKQGYV 60
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.5 bits (68), Expect(2) = 0.008
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -1
Query: 323 FEVILVDPSHKAIRRDPK 270
FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 25.4 bits (53), Expect(2) = 0.008
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 473 LYGKPKSHGVNQLKPTRN 420
+Y KPK G+ QLK RN
Sbjct: 275 VYSKPKHQGITQLKFQRN 292
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +1
Query: 40 SICIQK*ANGKSLTVLDRCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLAETSGAATSRS 219
++ +Q ++ S++V+D CL S+A CP A++ L ++ + S +AT
Sbjct: 1958 TLFLQGCSSKDSVSVIDECLKLLFLFHSLAQSKKCPQEATMLLLDALLMVFYSSSATGSQ 2017
Query: 220 QTTHL 234
+ T +
Sbjct: 2018 ELTEV 2022
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 228 RGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRR 106
+ L GR + G G + +GG RR AW RR + R
Sbjct: 136 KALVGVGRRAAGAGLQAVVPEARGGERRRAWRRRGLVATLR 176
>03_03_0223 - 15570099-15570226,15572948-15573055,15573295-15573550
Length = 163
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 636 RVWQSGQVDWYARRFPGPQGRTKPE 562
++W G DW+ RFPG G PE
Sbjct: 117 QLWDEGPCDWFDARFPG-SGNLAPE 140
>02_02_0445 - 10351483-10351606,10351987-10353170
Length = 435
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -3
Query: 633 VWQSGQVDWYARRFPGPQGRTKPED*ATVLTKVMLIQNPCATGARK--RPVAKGATLWQA 460
+ +G+ D YAR F P G K + ++L KVM +++ +G K V + T W A
Sbjct: 337 IQSAGKDDIYARDFSAPTGEDKMD--KSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNA 394
Query: 459 QEPW 448
PW
Sbjct: 395 --PW 396
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 216 SAGRSSRGLGKGHRYSQTKGGSRRAAW 136
+AG+ GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 577 PDKARRLGYRANQGYVDSESVCDWCPQASSC 485
P ARRL YV+ + WCP A C
Sbjct: 266 PGAARRLRGALLASYVEDNAAARWCPSAPHC 296
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 225 GLTSAGRSSRGLGKGHRYSQTKGGSRRAA 139
G++ +G G G+G KGGSR AA
Sbjct: 174 GVSGSGAGGGGRGRGRGSDDAKGGSRAAA 202
>06_01_1010 + 7866158-7866661
Length = 167
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 237 REMRGLTSAGRSSRGLGKGHRYSQTKGGSRR 145
R+ G+ G + G GKG R+ GG RR
Sbjct: 57 RKEAGMPGGGARAPGSGKGRRWRPEHGGKRR 87
>03_02_0275 +
7042433-7042732,7042864-7043140,7043751-7044231,
7044943-7045491,7045556-7045680,7045824-7045966
Length = 624
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/32 (31%), Positives = 13/32 (40%)
Frame = -2
Query: 580 RPDKARRLGYRANQGYVDSESVCDWCPQASSC 485
RPD A R + Y++ WCP C
Sbjct: 234 RPDIAERFERFLLESYIEDNDTVKWCPSTPHC 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,395,580
Number of Sequences: 37544
Number of extensions: 405736
Number of successful extensions: 1095
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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