Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0754.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   9e-21
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                 29   3.6  
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   28   6.3  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 97.5 bits (232), Expect = 9e-21
 Identities = 48/90 (53%), Positives = 60/90 (66%)
 Frame = -1

Query: 527 FRIRVRLVPASVQLLRVPLYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWV 348
           +R+RVR       + +   YGKP + GVN+LK  R+L+S+AEE           L+SYWV
Sbjct: 62  YRVRVRRGGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWV 121

Query: 347 AQDSSYKYFEVILVDPSHKAIRRDPKINWI 258
            QDS YKYFEVI+VDP HKAIRRD +INWI
Sbjct: 122 GQDSIYKYFEVIMVDPFHKAIRRDARINWI 151



 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 31/49 (63%), Positives = 37/49 (75%)
 Frame = -3

Query: 246 HKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100
           HKHRE+RGLT+AG  +RG+ KGH Y++  G SRRA W R NTL LRR R
Sbjct: 156 HKHRELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 22/44 (50%), Positives = 28/44 (63%)
 Frame = -2

Query: 661 LMRFFVACKGMAVRSS*LVCXALPRPTRPDKARRLGYRANQGYV 530
           L+RF +  +    R    +  A  RPTRPDKARRLGY+A QG+V
Sbjct: 18  LLRFLLRVRCWQYRQLTAIHRAT-RPTRPDKARRLGYKAKQGFV 60


>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 249 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 160
           +H  + ++GLT A  S   LG GH YS+ K
Sbjct: 61  MHFDKMIKGLTGAMASKAQLGLGHSYSRAK 90


>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 329  CMKNLVQPSKSSTHGDHRNDGQHAPQ-QWIEGCAWASTG*HHGSW 460
            C +    P ++S+H  +RN GQ A + Q     A A+ G  +G W
Sbjct: 883  CCRRWKSPGETSSHTVYRNKGQDAGEIQRTYTIAGANPGFQNGGW 927


>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 332 MKNLVQPSKSSTHGDHRNDGQHAPQQWIEGCAW 430
           ++NL  P +  T G     G + P+ W+ GCAW
Sbjct: 423 LQNLYIPPEGVT-GIPLGVGNYGPEAWLLGCAW 454


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,999,347
Number of Sequences: 59808
Number of extensions: 452666
Number of successful extensions: 1013
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)