Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0754.Seq
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL...   108   2e-25
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   7.0  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   9.2  

>Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL10
           protein.
          Length = 204

 Score =  108 bits (259), Expect = 2e-25
 Identities = 53/90 (58%), Positives = 63/90 (70%)
 Frame = -1

Query: 527 FRIRVRLVPASVQLLRVPLYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWV 348
           FRIRVR       + +   YGKPKSHGVNQLKP R LQS+AEE           L+SYWV
Sbjct: 62  FRIRVRCGGRKRPVHKGCTYGKPKSHGVNQLKPYRCLQSVAEERVGGRLGGLRVLNSYWV 121

Query: 347 AQDSSYKYFEVILVDPSHKAIRRDPKINWI 258
           AQD+++KYFEVI+VDP + AIRRDP +NWI
Sbjct: 122 AQDAAHKYFEVIMVDPPNNAIRRDPNVNWI 151



 Score = 87.0 bits (206), Expect = 5e-19
 Identities = 41/52 (78%), Positives = 46/52 (88%)
 Frame = -3

Query: 255 DAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100
           +AVHKHRE+RGLTSAG+SSRGLGK +RYSQT GGSRRAA +RRN L LRR R
Sbjct: 153 NAVHKHRELRGLTSAGKSSRGLGKAYRYSQTIGGSRRAAGVRRNRLHLRRYR 204



 Score = 34.3 bits (75), Expect = 0.004
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -3

Query: 693 RKLYRKKLXQC*CVFLLRVRVWQSGQVDWYARRFPGPQGRTKPED*A-TVLTKVMLIQNP 517
           ++LYRKK       +LLRVR WQ  Q+  +  R P P   T+         T   + +  
Sbjct: 8   QELYRKKQSDV-MRYLLRVRAWQYRQMTRF-HRAPRPWRPTRLRRLGYKAKTGFSIFRIR 65

Query: 516 CATGARKRPVAKGAT 472
              G RKRPV KG T
Sbjct: 66  VRCGGRKRPVHKGCT 80



 Score = 32.3 bits (70), Expect = 0.015
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 592 PRPTRPDKARRLGYRANQGY 533
           PRP RP + RRLGY+A  G+
Sbjct: 40  PRPWRPTRLRRLGYKAKTGF 59


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 1   FFFSNNILLTHWLSICIQK*ANGKSLTVLDR 93
           F   N ILL  +L+I +   A+  SLT +++
Sbjct: 699 FICGNYILLNVFLAIAVDNLADADSLTTVEK 729


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 198 RGLGKGHRYSQTKGGSRR 145
           +G+G GH Y   + G RR
Sbjct: 320 KGVGSGHLYYYEENGDRR 337


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,884
Number of Sequences: 2352
Number of extensions: 14024
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)