Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0754.Seq
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal prote... 94 1e-19
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 28 7.4
AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine re... 28 7.4
Z34976-1|CAA84428.1| 681|Caenorhabditis elegans Cog2 protein pr... 27 9.8
U61947-9|AAB03139.2| 681|Caenorhabditis elegans Conserved oligo... 27 9.8
>U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 15 protein.
Length = 204
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/90 (46%), Positives = 60/90 (66%)
Frame = -1
Query: 527 FRIRVRLVPASVQLLRVPLYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWV 348
+R+RVR + + YGKPK+HGVN+LK ++ Q++AE L+SYWV
Sbjct: 62 YRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWV 121
Query: 347 AQDSSYKYFEVILVDPSHKAIRRDPKINWI 258
A+DS+YK++EV+L+DP HKAIRR+P WI
Sbjct: 122 AEDSTYKFYEVVLIDPFHKAIRRNPDTQWI 151
Score = 76.2 bits (179), Expect = 2e-14
Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 7/205 (3%)
Frame = -3
Query: 693 RKLYRKKLXQC*CVFLLRVRVWQSGQVDWYARRFPGPQGRTKPED*ATVLTKV----MLI 526
++++RKK +LLR+R W Q+ R P P T+PE + + ++
Sbjct: 8 QEIWRKKQSDA-LRYLLRIRTWHYRQLS-AVHRVPRP---TRPEKARRLGYRAKQGFVVY 62
Query: 525 QNPCATGARKRPVAKGATLWQAQEPWCQPVE-AHAQPSIH--C*GACWPSLRWSPCVELL 355
+ G RKRPV KG T + + ++ A ++ ++ G SLR +
Sbjct: 63 RVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVA 122
Query: 354 LGCTRFFIQVFRGYPRGPVTQGHSSRS*DQLDRDAVHKHREMRGLTSAGRSSRGLGKGHR 175
T F +V P + + Q VHKHRE RGLTSAGR SRGLGKG R
Sbjct: 123 EDSTYKFYEVVLIDPFHKAIRRNPDT---QWITKPVHKHREQRGLTSAGRKSRGLGKGWR 179
Query: 174 YSQTKGGSRRAAWLRRNTLQLRRKR 100
+S T+GGS+ W R+NT RKR
Sbjct: 180 FSATRGGSQAKNWKRKNTKVFHRKR 204
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = -2
Query: 595 LPRPTRPDKARRLGYRANQGYV 530
+PRPTRP+KARRLGYRA QG+V
Sbjct: 39 VPRPTRPEKARRLGYRAKQGFV 60
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
protein C48B4.4c protein.
Length = 1704
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 595 APXIPVNLTGLPYPYTQQKNALTLXKFFP 681
AP +P+ L GLP P + + FFP
Sbjct: 234 APDLPITLRGLPEPRYKTSSVSAFIDFFP 262
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
protein C48B4.4b protein.
Length = 1691
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 595 APXIPVNLTGLPYPYTQQKNALTLXKFFP 681
AP +P+ L GLP P + + FFP
Sbjct: 234 APDLPITLRGLPEPRYKTSSVSAFIDFFP 262
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
protein C48B4.4a protein.
Length = 1689
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 595 APXIPVNLTGLPYPYTQQKNALTLXKFFP 681
AP +P+ L GLP P + + FFP
Sbjct: 234 APDLPITLRGLPEPRYKTSSVSAFIDFFP 262
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 595 APXIPVNLTGLPYPYTQQKNALTLXKFFP 681
AP +P+ L GLP P + + FFP
Sbjct: 234 APDLPITLRGLPEPRYKTSSVSAFIDFFP 262
>AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine
receptor, class h protein35 protein.
Length = 335
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 556 LVFGLCPALWAWEAPXIPVNLTGLPYPYTQQKNALTLXKFFP 681
LV+ + W IP + GLP YT++ + ++ KF+P
Sbjct: 140 LVYSAVAGIGLWT---IPTTVWGLPNQYTEKLSIVSSGKFYP 178
>Z34976-1|CAA84428.1| 681|Caenorhabditis elegans Cog2 protein
protein.
Length = 681
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 571 CPALWAWEAPXIPVNLTGLPYPYTQQKNA 657
C ALW +A L G +P+++++NA
Sbjct: 163 CSALWLQKAASFASELKGSTFPHSEEENA 191
>U61947-9|AAB03139.2| 681|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 2 protein.
Length = 681
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 571 CPALWAWEAPXIPVNLTGLPYPYTQQKNA 657
C ALW +A L G +P+++++NA
Sbjct: 163 CSALWLQKAASFASELKGSTFPHSEEENA 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,855,233
Number of Sequences: 27780
Number of extensions: 320198
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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