Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0754.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.52 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.7  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   8.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.5  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 622 GLPYPYTQQKNALTLXKFFPIQL-PG 696
           GLP+ + +QKN +     FPI L PG
Sbjct: 513 GLPFTFREQKNLMIELDKFPITLQPG 538


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 571 CPALWAWEAPXIPVNLTGLPYPYTQQKNALTLXK 672
           CPA W W  P I    +G   P   Q+ AL   K
Sbjct: 383 CPADWLWIVPPI----SGSATPVFHQEMALYYLK 412


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 222 LTSAGRSSRGLGKG 181
           +T  G+  +GLGKG
Sbjct: 1   MTGRGKGGKGLGKG 14


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 616 LTGLPYPYTQQKNALTLXKFFPIQLPG 696
           + GLP PY   K  ++L     ++ PG
Sbjct: 487 IQGLPPPYRLNKPLMSLITSSEVRQPG 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,574
Number of Sequences: 438
Number of extensions: 3808
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)