Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0751.Seq
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 28 1.0
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 1.3
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 27 2.3
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 4.1
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51... 26 4.1
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 4.1
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.4
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 26 5.4
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 7.1
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 25 7.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 7.1
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 9.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 9.4
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 9.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 9.4
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 607 IHRRFQPKWRSFFQLKRQTAKSDAASSE 524
IH KW+ +LK Q K+D A SE
Sbjct: 135 IHELLDAKWKEIAELKTQIEKNDQALSE 162
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -1
Query: 438 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGV 301
AP PAAP+ P+A P Q ++P A+ V + PP+ V P V
Sbjct: 544 APQRPAAPVVPEA-PSVPQRPAVPVVPEALSVPQ--PPVAPVAPEV 586
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 465 YSHPQPIRRAPTVPAAPIPPQARPGQA 385
+S+P ++R P +PA P+ P RP A
Sbjct: 220 FSYPYELQRKPLIPAHPV-PSFRPTSA 245
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 201 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 100
+RC T SIPC++ + ND+N NF
Sbjct: 85 FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118
>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
L51|Schizosaccharomyces pombe|chr 2|||Manual
Length = 145
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 434 RQCQQHRFHLKHVRGKHNHFRQFFYLGRFKYI 339
++ Q FH+ + +GKH R ++ GR K I
Sbjct: 53 KESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 276 YTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV*DFKSY 133
Y+S+ ++P + ++ Y+ P Y C I N+ +P S DF ++
Sbjct: 441 YSSIYSNDVPAIPPNVPYTFVDPYTYACYINNNS--YLPPSYMDFYTW 486
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 453 QPIRRAPTVPAAPIPPQARPGQ 388
+P+ R P +P P+P + PG+
Sbjct: 101 EPLPREPPLPNEPVPEEPLPGE 122
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 610 NIHRRFQPKWRSFFQLKRQTAKSD--AASSEDGFWWGIEGNQDPVTKAA 470
N H+ F P S F +KR +KS +A+ IEG+ K A
Sbjct: 103 NYHKSFSPNTFSGFNVKRSASKSPKRSANGSTSEDISIEGSPSETAKGA 151
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 604 HRRFQPKWRSFFQLKRQT 551
HRR P W+SFF K+ T
Sbjct: 720 HRRNAPWWKSFFTGKKPT 737
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 313 VSRSHHSGVNRLLHKPGQGKYAFASKTYSIFL 218
V + H G+N L PG A ASK I L
Sbjct: 333 VLKYHSDGINSLAFHPGSNVIALASKDTRISL 364
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQP 379
P P+ + V P PP A PG++ P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAP 401
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 450 PIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 316
P RR V PAAP+P A P + P A P+ + P L L
Sbjct: 316 PKRRPIEVKPAAPVPTPAPPVKTSPHPASYRPQPTRNVEVRPLLML 361
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = -1
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLL-PRAVQVHRTLPPL 322
P P P AP P + P AQP V P A + +PP+
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -1
Query: 306 GVIIQA*TDFYTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCS 154
G+ Q ++FY + +N+ ++ + LP+ R LIQ+ T+ IP S
Sbjct: 160 GIQAQTLSNFYMAF-SQNLVIIPVLNKVDLPTADVDRTLIQVQQTFDIPMS 209
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 9.4
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Frame = -1
Query: 462 SHP---QPIRRAPTVPAA------PIPPQARPGQAQP---LQAVLLPRAVQVHRTLPPL 322
+HP QPI AP VPA PIPPQA P P V LP A + P+
Sbjct: 230 NHPMAGQPIAIAP-VPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPV 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,468
Number of Sequences: 5004
Number of extensions: 48294
Number of successful extensions: 139
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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