Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0751.Seq
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.61
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5) 30 1.4
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 30 1.9
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53) 28 7.5
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 7.5
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28) 28 7.5
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) 27 9.9
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 9.9
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 27 9.9
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 480 QKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
Q +L Y+ P P AP P PP+ +QP QAV P
Sbjct: 481 QPQLIYTQPSPPASAPVTPQQYQPPRHAVPTSQPYQAVQRP 521
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = -1
Query: 501 KEIRIRSQKRLPYSHPQPIRRAP-TVPAAPIPPQARPGQAQPLQA-----VLLPRAVQVH 340
+E + + +++ P + +P ++ P VP + PQA PG P+ A + P A+
Sbjct: 101 REKKPKEKRKAPENAARPAKKVPIAVPVMGVIPQAMPGMVPPVMAPAGAPIAAPMAIPTQ 160
Query: 339 RTLPPLRLVFPGVIIQA*TDFYTSLVKENMP 247
+ P ++F + T+ S++ P
Sbjct: 161 QPDLPNNILFLTNLPMETTELMLSMLFNQFP 191
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -1
Query: 426 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 298
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
Length = 130
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -1
Query: 459 HPQPIRR----APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
HP P+RR P+ A+ IPP RP ++P++ P + H +LP RL +P
Sbjct: 27 HP-PVRRDHDSLPSENASTIPPITRPLTSRPIRG-QHPPVRRAHDSLPSERLDYP 79
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 438 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
+P +P AP+ P P P +A+ P LPP
Sbjct: 217 SPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -1
Query: 432 TVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 325
T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 1007 TLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 477 KRLPYSHPQPIRRAPTVPAAPIP-PQARPGQ 388
K +PY P P+R+ P + P P +RPGQ
Sbjct: 487 KPMPYPVPVPVRQPPMIQRFYYPVPVSRPGQ 517
>SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 292 GVNRLLHKPGQGKYAFASKTYSIFLTISVRISVFNTTKHDLEYSL 158
G + L G YA+ +++ FLT VFN+T DL+ L
Sbjct: 191 GQDYLKGMAGAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHL 235
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -1
Query: 426 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA*TDFYTSLVKENMP 247
P PIP QA PGQA P + P VQ + + P FPG + ++ T
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPGANVSLGSNMPTMPAGTTTV 62
Query: 246 LLRKHIRYSLP 214
++ +R +P
Sbjct: 63 NFQQQVRPQVP 73
>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 486 RSQKRLPYSHPQP--IRRAPTVPAAPIPPQARPGQAQP 379
+ QK P + P+P + P PAAP PP P A P
Sbjct: 206 KQQKATPVNPPEPDYLEPTPPPPAAPAPPPP-PAAAPP 242
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 294 QA*TDFYTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 151
Q+ +Y VKE + H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
Length = 264
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 498 EIRIRSQKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
E ++ K + + P P+ P P P PP PG +P
Sbjct: 59 EKKLEEAKSMAAATPPPLCAPPPPPPPPPPPPPPPGAKKP 98
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
P P P P+ P P+ P+ RP +QP
Sbjct: 51 PTPAPTPPPALPSTPTLPLAPRPRPTASQP 80
>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
Length = 465
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 498 EIRIRSQKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
E ++ K + + P P+ P P P PP PG +P
Sbjct: 260 EKKLEEAKSMAAATPPPLCAPPPPPPPPPPPPPPPGAKKP 299
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 468 PYSHPQPIRRAPTVPAAPIP 409
PY HP+P AP P AP P
Sbjct: 157 PYYHPKPADPAPMQPPAPPP 176
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -1
Query: 492 RIRSQKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
R R + R Y P+P R P P P PP P P
Sbjct: 848 RGRGRGRSRYRRPRPRPRRPPPPPPPPPPPPPPPPPPP 885
>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
Length = 479
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = -1
Query: 486 RSQKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
R ++R P P AP P P PPQ PLQ + A+ V + PP
Sbjct: 415 RRRRRSLVQPPPPPPPAPLPPPPPPPPQPTTALPDPLQGPEV--ALHVEVSSPP 466
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 441 RAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
R TVP P+PP P Q+ P +L+P + LPP
Sbjct: 629 RPTTVP--PLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 477 KRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRA 352
+R PY Q +R P P Q PG +PL +L A
Sbjct: 396 QRQPYKFSQTVRNPPPAGQMPEGGQGIPGGQEPLNPSVLAAA 437
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -1
Query: 468 PYSHPQPIRRAPTVP--AAPIPPQARPG--QAQPLQAVLLPRAVQVHRTLPPLR 319
P + P P R P+ P A PIPP +P ++P P + +PP R
Sbjct: 1036 PSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPPR 1089
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,518,736
Number of Sequences: 59808
Number of extensions: 366374
Number of successful extensions: 1139
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -