Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0751.Seq
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 31 0.70
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z93372-5|CAI70403.1| 104|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 30 1.6
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 30 1.6
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 30 1.6
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 2.1
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 2.1
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 2.1
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 29 2.8
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 3.8
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine r... 28 5.0
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 6.6
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 27 8.7
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 27 8.7
AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical... 27 8.7
AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical... 27 8.7
AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 480 QKRLPYSHPQPI-RRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 328
Q+ + + P+PI ++AP V AP PP+ + QAQP+Q P V + P
Sbjct: 240 QQPVVQAPPKPIVQQAPVVQQAP-PPKQQQAQAQPVQQPPNPAPVVQQASAP 290
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -1
Query: 456 PQP-IRRAPTVPAAPIPPQARPGQAQPLQ 373
P+P +++APT AAP PP+ P QA P+Q
Sbjct: 311 PKPAVQQAPT-RAAPAPPKPAPQQAPPVQ 338
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = -1
Query: 468 PYSHPQPIRRAPTVPAAPI-----PPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLV 313
P + P + PTV API PP QAQ QA P A Q+ PP +V
Sbjct: 87 PVAQAPPAQAKPTVQQAPILVAQAPPNPPAPQAQQHQAPAPPAARQIPVQQPPKPVV 143
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 438 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
AP A PI Q +P Q Q QA + + V + PP
Sbjct: 42 APPAQAKPIVQQTQPAQKQQAQAPPAAQQIPVVQQAPP 79
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = -1
Query: 489 IRSQKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 316
+ + +LPY P P +P AP PP R PL V + TLPP L
Sbjct: 729 VATNSKLPYFIPPPQGYVGPLPPAPPPPTFRVAPQVPLPVVQTTQTAP-KPTLPPTTL 785
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = +1
Query: 325 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC----WHCRCS 441
W+KRP Y R R ++ K LP + + C W C C+
Sbjct: 567 WKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRCICN 609
>Z93372-5|CAI70403.1| 104|Caenorhabditis elegans Hypothetical
protein BE10.5 protein.
Length = 104
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 501 KEIRIRSQKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQ 382
KE + S K+ H QP+ P P AP+ P R + Q
Sbjct: 11 KEDTVDSSKKGENRHDQPLAPQPAQPGAPLTPDRRTEKKQ 50
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = -1
Query: 492 RIRSQKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAV 367
++R+Q+++P + +PIRR A+ + P+A P A+ ++ V
Sbjct: 227 KMRAQQQVPVAADRPIRRLSIARASMMTPKASPKLAKYMEPV 268
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = -1
Query: 492 RIRSQKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAV 367
++R+Q+++P + +PIRR A+ + P+A P A+ ++ V
Sbjct: 178 KMRAQQQVPVAADRPIRRLSIARASMMTPKASPKLAKYMEPV 219
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = -1
Query: 492 RIRSQKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAV 367
++R+Q+++P + +PIRR A+ + P+A P A+ ++ V
Sbjct: 227 KMRAQQQVPVAADRPIRRLSIARASMMTPKASPKLAKYMEPV 268
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPL 376
P +PQ AP P AP P A P A PL
Sbjct: 54 PAPYPQQAVPAPAPPPAPYPQHAVPAPAPPL 84
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/48 (37%), Positives = 19/48 (39%)
Frame = -1
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
P +PQ AP P AP P A P A P Q P H PP
Sbjct: 99 PAPYPQHAVPAPAPPPAPYPQHAVPAPA-PYQQQPPPPPPPPHYPPPP 145
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 519 VSGGE*KEIRIRSQKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
+S GE + + + + P P VP +PPQ RP Q P+Q P
Sbjct: 327 LSNGECISVPAPTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 380
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 519 VSGGE*KEIRIRSQKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
+S GE + + + + P P VP +PPQ RP Q P+Q P
Sbjct: 424 LSNGECISVPAPTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 477
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 501 KEIRIRSQKRLPYSHPQPI----RRAPTVPAAPIPPQARPG 391
++++ +++R+ SHP P+ A +P AP+P PG
Sbjct: 772 RKLKQENERRVLVSHPDPVISMNAMASVIPGAPLPAPVIPG 812
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVL-LPRAVQVHRTLPPLRLVFP 307
P+P R+ + AP+ P ARP P A L L A + + P R + P
Sbjct: 725 PKPPRKKKPIAEAPLRPPARPAPIVPTSAGLSLVLAASLPTSSTPSRFLNP 775
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 456 PQPIRRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPPLRL 316
P P+ RA P AP RP G A+P A L P Q R PP R+
Sbjct: 126 PMPVSRAGGPPRAPTSMGGRPMTGMARPPTAGLRPVTQQGLRA-PPSRM 173
>AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein247 protein.
Length = 325
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 6 YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 98
++ + N ITFF PV G C+L K +R
Sbjct: 15 FLISISNVITFFEIPVCTFGAYCILFKTPER 45
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -1
Query: 435 PTVP-AAPIPPQARPGQAQP 379
P++P P+PPQ PGQA P
Sbjct: 406 PSLPDMGPLPPQTAPGQAAP 425
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARP 394
PY P P R AP + + PQ RP
Sbjct: 220 PYIEPTPARPAPYIEPSTAKPQPRP 244
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -1
Query: 450 PIRRAPTVPAAPIPPQ---ARPGQ--AQPLQAVLLPRAVQVHRTLP 328
P +AP P AP+ P+ ARP +P AV RA Q+ + P
Sbjct: 267 PSPKAPVAPVAPVKPKPFVARPAPNFGKPRAAVAPARAPQITQRAP 312
>AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18b protein.
Length = 586
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -1
Query: 468 PYSH-PQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
P +H P P+ PT P P P A P QA A
Sbjct: 265 PLAHLPAPVAIYPTPPPPPAPAPAAPQQASAAPA 298
>AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18a protein.
Length = 946
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -1
Query: 468 PYSH-PQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
P +H P P+ PT P P P A P QA A
Sbjct: 625 PLAHLPAPVAIYPTPPPPPAPAPAAPQQASAAPA 658
>AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical
protein H31G24.1 protein.
Length = 109
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
PQP ++P + A P PP P Q P QA
Sbjct: 72 PQPYAQSP-IAAVPPPPPPPPPQPAPAQA 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,667,420
Number of Sequences: 27780
Number of extensions: 274382
Number of successful extensions: 954
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -