Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0751.Seq
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family... 31 0.66
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 30 1.2
At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z... 30 1.5
At1g13050.1 68414.m01513 expressed protein 30 1.5
At4g36090.1 68417.m05137 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 2.7
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 29 3.5
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 29 3.5
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro... 28 4.7
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 28 4.7
At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin fa... 28 4.7
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 28 4.7
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 6.1
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 6.1
At5g08520.1 68418.m01011 myb family transcription factor contain... 27 8.1
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 27 8.1
>At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family
protein identical to proline-rich protein 2 [Arabidopsis
thaliana] gi|7620011|gb|AAF64549
Length = 321
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -1
Query: 465 YSHPQPIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 322
Y P PI + P V P P PP+ +P + P V +T PPL
Sbjct: 216 YKPPVPIYKPPVVIPKKPCPPKIHKPIYKPPVPIYKPPVVIPKKTFPPL 264
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -1
Query: 501 KEIRIRSQKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTL 331
+E +S + P HPQ ++P +P+ P+++ L+ + V+ HR L
Sbjct: 36 QETLSQSPPQSPLFHPQSPPEPKSLPLSPLSPKSKEEPESQTMTPLMSKHVKTHRNL 92
>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
ZF-HD homeobox family protein similar to hypothetical
proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
homeobox family protein GP|13374061 (Flaveria
bidentis);GP:5091602 {Oryza sativa}
Length = 279
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Frame = -1
Query: 480 QKRLPYSHPQPIRRAPTVPA-------APIPPQARPGQAQPLQAVLLP 358
+K LPY H P + P P AP+ + P QA PLQ L P
Sbjct: 122 RKELPYFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPP 169
>At1g13050.1 68414.m01513 expressed protein
Length = 317
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQ 373
P S P P+R P P+PP+ P A+PLQ
Sbjct: 68 PSSRPLPLR-----PEEPLPPRHNPNSARPLQ 94
>At4g36090.1 68417.m05137 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to At2g17970, At2g17960; contains
PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 385
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 456 DDCTVAAFVTGS*FPSIPHQKPSSDDAASLLAV*RLSW 569
D AFV GS S+ H PSS S A ++SW
Sbjct: 105 DSLKAGAFVFGSLSDSVSHAMPSSQSTVSEAASAQMSW 142
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -1
Query: 456 PQPIRRAPTVPAAPIPPQARPG-QAQPLQAVLLPRAVQVHRTLPPLRLVFPG 304
P P R +P P PP P A+ L P V+ LPP L+F G
Sbjct: 58 PPPAMRRRVLPRPPPPPPPLPMFDAEVLCCCYPPTRVRREAPLPPPPLIFVG 109
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 468 PYSHPQPIRRAPTVPA--APIPPQARPGQAQPL 376
P+ HP P ++P P AP+ P A+P P+
Sbjct: 60 PHPHPHPPAKSPVKPPVKAPVSPPAKPPVKPPV 92
>At5g48360.1 68418.m05975 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 782
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = -1
Query: 468 PYSHPQ-PIRRAPTVPAAPIPPQAR------PGQAQPLQAVLLPRAVQVHRTLPPLRL 316
P S P P+ +P P P+PP P + A++LPR+ + H T P L L
Sbjct: 47 PISPPFFPLESSPPSPPPPLPPTPPTTFAVFPTFPANISALVLPRSSKPHHTSPTLLL 104
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 480 QKRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQV--HRTLPP 325
Q++ HPQ + P +P +PP + PL LPR +Q+ H +PP
Sbjct: 573 QQQQHQGHPQQMLPMPNMPHHQLPPSSH----MPLHPHHLPRPMQMPPHGHMPP 622
>At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245, SP|Q03211 Pistil-specific
extensin-like protein precursor (PELP) {Nicotiana
tabacum}; contains Pfam profile PF01190: Pollen proteins
Ole e I family
Length = 239
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -1
Query: 471 LPYSHPQPIRRAPTVP--AAPIPPQARPGQAQPLQAVLLPRAVQVHR--TLPPLR 319
LP P P + PT+P API A P P++ LP A + TLPP++
Sbjct: 39 LPQHLPLPPIKLPTLPPAKAPIKLPAYPPAKAPIKLPTLPPAKAPIKLPTLPPIK 93
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQ 346
P+ HP AP P P+PP P Q+ P L R+ Q
Sbjct: 19 PHLHPPS---APLPPPPPLPPPPPPRQSHPESPNLYGRSTQ 56
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 465 YSHPQPIRRAPTVPAAPIPPQARP 394
YS P P+ P P P+PP P
Sbjct: 809 YSPPPPVFSPPPKPVTPLPPATSP 832
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 477 KRLPYSHPQPIRRAPTVPAAPIPPQARPGQAQPL-QAVLLPRAVQVHRTLPP 325
K +P SH P R P+ PA+ IPP R + P + P + H + PP
Sbjct: 171 KLVPPSHSPP-RHLPSPPASEIPPPPRHLPSPPASERPSTPPSDSEHPSPPP 221
>At5g08520.1 68418.m01011 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPL--QAVLLPRAVQVHR 337
P + P P A V AAP+P PG A + +PR HR
Sbjct: 253 PVNLPAPPHMAYGVHAAPVPGSVVPGAAMNIGQMPYTMPRTPTAHR 298
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 501 SIPHQKPSSDDAASLLAV*RLSWKKLLHLGWNRRWMLRXHHGY 629
S+P+ K S AA + + +LL W++ WML + +
Sbjct: 496 SVPYDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSF 538
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,816,061
Number of Sequences: 28952
Number of extensions: 253839
Number of successful extensions: 854
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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