Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0750.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   7e-04
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.061
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 32   0.57 
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 32   0.57 
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   9.2  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -1

Query: 421 DVVAVSQAPSPESNPDSPLPVTTM 350
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/28 (75%), Positives = 21/28 (75%)
 Frame = +1

Query: 1   LPVVICLSQRLSHACLSASRIKAIPRMA 84
           LPVVICLSQRLSHACLS S      RMA
Sbjct: 134 LPVVICLSQRLSHACLSISTCTVKLRMA 161


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 21/28 (75%), Positives = 21/28 (75%)
 Frame = +1

Query: 1   LPVVICLSQRLSHACLSASRIKAIPRMA 84
           LPVVICLSQRLSHACLS S      RMA
Sbjct: 110 LPVVICLSQRLSHACLSISTRTVKLRMA 137


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -1

Query: 412 AVSQAPSPESNPDSPLPVTTM 350
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -2

Query: 411 PFLRLPLRNRTLIPRYP 361
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 11  LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 145
           L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 11   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 145
            L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 866  LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 430 PSLDVVAVSQAPSPESNPDSPLP 362
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,636,825
Number of Sequences: 59808
Number of extensions: 536241
Number of successful extensions: 1314
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)