Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0749.Seq
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.5  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   8.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = -1

Query: 668 ILVKAPTCCLRAIQKWARKRQQLGCSQSS*CMRIL 564
           +  ++  CC  A+      RQ +  S+   C+R +
Sbjct: 608 LAARSRRCCYHAVAPGTDIRQSIALSRKKKCIRYM 642


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = -1

Query: 668 ILVKAPTCCLRAIQKWARKRQQLGCSQSS*CMRIL 564
           +  ++  CC  A+      RQ +  S+   C+R +
Sbjct: 500 LAARSRRCCYHAVAPGTDIRQSIALSRKKKCIRYM 534


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +2

Query: 557 KKEVSSYIKKIGY--NPAAVAFVPISGWHGDNMLEPSPK 667
           K +V    ++ G+  +      VPISG H D    P P+
Sbjct: 369 KSDVKYTFEETGFTLDKGVSIMVPISGLHYDPEYYPDPE 407


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,367
Number of Sequences: 336
Number of extensions: 4264
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)