Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0749.Seq
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 161 1e-40
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 160 2e-40
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 160 2e-40
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 95 1e-20
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 95 1e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 74 3e-14
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 37 0.004
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.009
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.009
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 34 0.021
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.036
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 32 0.083
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.25
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.33
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.58
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 28 1.8
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 4.1
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 26 7.2
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 9.5
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 25 9.5
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 9.5
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 9.5
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.5
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 161 bits (390), Expect = 1e-40
Identities = 80/119 (67%), Positives = 91/119 (76%)
Frame = +3
Query: 153 QTYHREVREGGPGNG*RILQICLGIGQTKXXXXXXITIDIALWKFETSKYYVTIIDAPGH 332
+ + +E E G G+ + + + K ITIDIALWKFET KY VT+IDAPGH
Sbjct: 40 EKFEKEATELGKGS----FKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGH 95
Query: 333 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 509
RDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNK
Sbjct: 96 RDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154
Score = 143 bits (346), Expect = 3e-35
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +1
Query: 49 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 228
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 229 DKLKAERER 255
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 68.9 bits (161), Expect = 8e-13
Identities = 30/52 (57%), Positives = 42/52 (80%)
Frame = +2
Query: 506 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPS 661
+MD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+
Sbjct: 154 KMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPT 203
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 160 bits (389), Expect = 2e-40
Identities = 79/119 (66%), Positives = 91/119 (76%)
Frame = +3
Query: 153 QTYHREVREGGPGNG*RILQICLGIGQTKXXXXXXITIDIALWKFETSKYYVTIIDAPGH 332
+ + +E E G G+ + + + K ITIDIALWKFET KY VT+IDAPGH
Sbjct: 40 EKFEKEATELGKGS----FKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGH 95
Query: 333 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 509
RDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNK
Sbjct: 96 RDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154
Score = 143 bits (346), Expect = 3e-35
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +1
Query: 49 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 228
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 229 DKLKAERER 255
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 68.9 bits (161), Expect = 8e-13
Identities = 30/52 (57%), Positives = 42/52 (80%)
Frame = +2
Query: 506 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPS 661
+MD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+
Sbjct: 154 KMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPT 203
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 160 bits (389), Expect = 2e-40
Identities = 79/119 (66%), Positives = 91/119 (76%)
Frame = +3
Query: 153 QTYHREVREGGPGNG*RILQICLGIGQTKXXXXXXITIDIALWKFETSKYYVTIIDAPGH 332
+ + +E E G G+ + + + K ITIDIALWKFET KY VT+IDAPGH
Sbjct: 40 EKFEKEATELGKGS----FKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGH 95
Query: 333 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 509
RDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNK
Sbjct: 96 RDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNK 154
Score = 143 bits (346), Expect = 3e-35
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +1
Query: 49 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 228
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 229 DKLKAERER 255
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 68.9 bits (161), Expect = 8e-13
Identities = 30/52 (57%), Positives = 42/52 (80%)
Frame = +2
Query: 506 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPS 661
+MD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+
Sbjct: 154 KMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPT 203
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 94.7 bits (225), Expect = 1e-20
Identities = 50/119 (42%), Positives = 64/119 (53%)
Frame = +3
Query: 153 QTYHREVREGGPGNG*RILQICLGIGQTKXXXXXXITIDIALWKFETSKYYVTIIDAPGH 332
Q H E G G+ + T+ +T+D+A FE+ K I DAPGH
Sbjct: 210 QKLHNEAANSGKGS----FSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGH 265
Query: 333 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 509
RDFI MI G S AD AVL+V + FE G +NGQTREHA L LG+ +++V VNK
Sbjct: 266 RDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNK 324
Score = 74.1 bits (174), Expect = 2e-14
Identities = 32/65 (49%), Positives = 45/65 (69%)
Frame = +1
Query: 61 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 240
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 241 AERER 255
ER R
Sbjct: 235 EERAR 239
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +2
Query: 530 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLE 655
+SE RF+EIK VS + IK +G+ + V FVPIS G N+++
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 94.7 bits (225), Expect = 1e-20
Identities = 41/83 (49%), Positives = 58/83 (69%)
Frame = +3
Query: 261 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 440
T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + G
Sbjct: 303 TVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG 362
Query: 441 QTREHALLAFTLGVKQLIVGVNK 509
QTREHA+LA T G+ L+V +NK
Sbjct: 363 QTREHAVLARTQGINHLVVVINK 385
Score = 81.4 bits (192), Expect = 1e-16
Identities = 35/65 (53%), Positives = 48/65 (73%)
Frame = +1
Query: 61 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 240
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 241 AERER 255
ERE+
Sbjct: 296 EEREK 300
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 73.7 bits (173), Expect = 3e-14
Identities = 38/84 (45%), Positives = 54/84 (64%)
Frame = +3
Query: 258 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 437
ITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 102 ITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP------ 155
Query: 438 GQTREHALLAFTLGVKQLIVGVNK 509
QTREH LLA +GVKQ++V +NK
Sbjct: 156 -QTREHLLLARQVGVKQIVVYINK 178
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 55 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 141
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 36.7 bits (81), Expect = 0.004
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = +3
Query: 285 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 464
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R + +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVP 199
Query: 465 AFTLGVKQLIVGVNKW 512
+ K +G + W
Sbjct: 200 RISFVNKMDRMGADPW 215
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGI 150
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 49 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 144
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 300 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 395
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 49 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 144
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 300 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 395
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 34.3 bits (75), Expect = 0.021
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +3
Query: 303 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 482
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 483 KQLIVGVNK 509
K +I+ NK
Sbjct: 163 KHIIILQNK 171
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.036
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 285 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 32.3 bits (70), Expect = 0.083
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 258 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
ITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 79 ITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCG 144
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 276 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 300 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.58
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 312 IIDAPGHRDFIKNMITGTSQADCAVLIV 395
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 27.9 bits (59), Expect = 1.8
Identities = 27/79 (34%), Positives = 37/79 (46%)
Frame = +3
Query: 393 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKWIPLNHHTVSPDLRKSRRKYP 572
VA GT E GI NG E+A+ A +I V++ P++H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 573 HTSRRLATTQLLSLSCPFL 629
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 315 IDAPGHRDFIKNMITGTSQADCAVLIV 395
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 258 ITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 350
+ I+I + E +++ T+ID PG DFI N
Sbjct: 71 VEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +1
Query: 214 YAWVLDKLKAERERVSQSILLSGSSKLASTML 309
+ W D K+ ER+ +++ + G S + T++
Sbjct: 403 HLWTADACKSHFERIKKTLFIDGLSTFSDTLI 434
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 531 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 620
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 506 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSPKCL 673
+MD E + E +F + + S++K+ F+PISG G N+ S + L
Sbjct: 418 KMDEIE--WDENKFINLVNSIQSFLKESCGIIEKSKFIPISGLKGTNLTSISQEKL 471
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -1
Query: 323 SINDGNIVLASFELPESNIDCDTRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 144
S++ + L S+ P S T A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 235 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 107
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 9.5
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -1
Query: 386 HSAISLRGSCDHVLD--EISVSRSINDGNIVLASFELPESNID-CDTRSRSAFSLSNTQA 216
H ++ S ++D +S+ +SIN + SF +++ CD + S FS NT +
Sbjct: 249 HYVFAISSSSLQIIDINTLSLVKSINLKDDESFSFISRLTSVHFCDRQIFSKFSAVNTAS 308
Query: 215 YLKDPLPISWASFSNFSMVRLS 150
K I ASFS S + L+
Sbjct: 309 TSKTSDTIERASFSKPSFIFLT 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,697
Number of Sequences: 5004
Number of extensions: 69779
Number of successful extensions: 262
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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