Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0748.Seq
(698 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P15880 Cluster: 40S ribosomal protein S2; n=284; Eukary... 176 4e-43
UniRef50_O74892 Cluster: 40S ribosomal protein S2; n=5; Eukaryot... 161 1e-38
UniRef50_UPI00005A5FBC Cluster: PREDICTED: similar to 40S riboso... 155 1e-36
UniRef50_UPI0000D9B7B9 Cluster: PREDICTED: similar to ribosomal ... 154 2e-36
UniRef50_UPI00005A548A Cluster: PREDICTED: similar to 40S riboso... 151 1e-35
UniRef50_A4S964 Cluster: Cytosolic 80S ribosomal protein S2; Cyt... 146 6e-34
UniRef50_P25443 Cluster: 40S ribosomal protein S2; n=26; Eukaryo... 138 1e-31
UniRef50_Q8SRG6 Cluster: 40S RIBOSOMAL PROTEIN S2; n=1; Encephal... 115 1e-24
UniRef50_Q3LVZ1 Cluster: Ribosomal protein S2; n=1; Bigelowiella... 93 4e-18
UniRef50_UPI000057EB46 Cluster: UPI000057EB46 related cluster; n... 93 6e-18
UniRef50_UPI0000DC060C Cluster: UPI0000DC060C related cluster; n... 90 6e-17
UniRef50_Q6LXD3 Cluster: 30S ribosomal protein S5P; n=6; Euryarc... 88 2e-16
UniRef50_Q8U017 Cluster: 30S ribosomal protein S5P; n=34; Archae... 85 2e-15
UniRef50_UPI0000EB449D Cluster: UPI0000EB449D related cluster; n... 84 4e-15
UniRef50_Q9UX87 Cluster: 30S ribosomal protein S5P; n=5; Sulfolo... 84 4e-15
UniRef50_UPI0000DBFACC Cluster: UPI0000DBFACC related cluster; n... 80 6e-14
UniRef50_Q9DC49 Cluster: Adult male lung cDNA, RIKEN full-length... 79 8e-14
UniRef50_Q9BSW5 Cluster: RPS2 protein; n=26; Coelomata|Rep: RPS2... 79 8e-14
UniRef50_Q6L1A7 Cluster: 30S ribosomal protein S5P; n=7; Archaea... 79 1e-13
UniRef50_A7DRN6 Cluster: Ribosomal protein S5; n=1; Candidatus N... 78 2e-13
UniRef50_Q74MD4 Cluster: 30S ribosomal protein S5P; n=1; Nanoarc... 77 4e-13
UniRef50_Q673Q8 Cluster: Ribosomal protein S5; n=1; uncultured m... 76 1e-12
UniRef50_A0RUE7 Cluster: 30S ribosomal protein S5P; n=1; Cenarch... 73 9e-12
UniRef50_P26815 Cluster: 30S ribosomal protein S5P; n=3; Halobac... 72 1e-11
UniRef50_UPI0000500CC2 Cluster: ribosomal protein S2; n=8; Euthe... 70 5e-11
UniRef50_UPI0000DC004A Cluster: UPI0000DC004A related cluster; n... 68 2e-10
UniRef50_A7D107 Cluster: Ribosomal protein S5; n=1; Halorubrum l... 67 3e-10
UniRef50_Q6CKL2 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 65 1e-09
UniRef50_UPI0000DC0CDD Cluster: RBM27_MOUSE Isoform 2 of Q5SFM8 ... 64 3e-09
UniRef50_O55213 Cluster: Ribosomal protein S2; n=11; Coelomata|R... 62 1e-08
UniRef50_UPI0000502977 Cluster: UPI0000502977 related cluster; n... 60 4e-08
UniRef50_Q8TBR1 Cluster: MGC27348 protein; n=1; Homo sapiens|Rep... 59 1e-07
UniRef50_Q7XYL2 Cluster: Ribosomal protein rpS5; n=1; Bigelowiel... 57 4e-07
UniRef50_Q16TN2 Cluster: Putative uncharacterized protein; n=1; ... 57 4e-07
UniRef50_P59123 Cluster: 30S ribosomal protein S5; n=22; Bacteri... 55 2e-06
UniRef50_Q9PQP3 Cluster: 30S ribosomal protein S5; n=2; Firmicut... 54 3e-06
UniRef50_Q8RIH3 Cluster: 30S ribosomal protein S5; n=3; Fusobact... 54 4e-06
UniRef50_Q8EUD0 Cluster: 30S ribosomal protein S5; n=3; Mycoplas... 53 8e-06
UniRef50_Q9XD19 Cluster: 30S ribosomal protein S5; n=17; Bacteri... 53 8e-06
UniRef50_Q7Y258 Cluster: Ribosomal protein S5 precursor; n=1; Ch... 52 2e-05
UniRef50_Q7NEG9 Cluster: 30S ribosomal protein S5; n=34; cellula... 51 2e-05
UniRef50_A0CLK5 Cluster: Chromosome undetermined scaffold_20, wh... 51 3e-05
UniRef50_O67563 Cluster: 30S ribosomal protein S5; n=5; Bacteria... 51 3e-05
UniRef50_UPI0000D62CF0 Cluster: UPI0000D62CF0 related cluster; n... 50 4e-05
UniRef50_Q9RSL1 Cluster: 30S ribosomal protein S5; n=2; Deinococ... 50 5e-05
UniRef50_Q9X1J2 Cluster: 30S ribosomal protein S5; n=6; Bacteria... 49 1e-04
UniRef50_P93014 Cluster: 30S ribosomal protein S5, chloroplast p... 49 1e-04
UniRef50_A7QPU4 Cluster: Chromosome chr10 scaffold_138, whole ge... 48 2e-04
UniRef50_A0E2R7 Cluster: Chromosome undetermined scaffold_75, wh... 48 3e-04
UniRef50_Q6F1X7 Cluster: 30S ribosomal protein S5; n=32; Bacteri... 46 7e-04
UniRef50_UPI0001553406 Cluster: PREDICTED: hypothetical protein;... 45 0.002
UniRef50_Q6YR05 Cluster: 30S ribosomal protein S5; n=22; Bacteri... 45 0.002
UniRef50_Q50301 Cluster: 30S ribosomal protein S5; n=2; Mycoplas... 45 0.002
UniRef50_A0T0Y9 Cluster: Chloroplast 30S ribosomal protein S5; n... 45 0.002
UniRef50_Q5NQ48 Cluster: 30S ribosomal protein S5; n=155; cellul... 44 0.003
UniRef50_A3BJ14 Cluster: Putative uncharacterized protein; n=3; ... 44 0.004
UniRef50_Q7UN03 Cluster: 30S ribosomal protein S5; n=3; Bacteria... 44 0.004
UniRef50_Q92QF3 Cluster: 30S ribosomal protein S5; n=203; cellul... 44 0.005
UniRef50_Q82X75 Cluster: 30S ribosomal protein S5; n=11; Bacteri... 43 0.006
UniRef50_Q6KI38 Cluster: 30S ribosomal protein S5; n=9; Firmicut... 42 0.011
UniRef50_P59122 Cluster: 30S ribosomal protein S5; n=40; Bacteri... 42 0.011
UniRef50_A6PPX8 Cluster: Ribosomal protein S5; n=4; Bacteria|Rep... 42 0.015
UniRef50_P66575 Cluster: 30S ribosomal protein S5; n=128; Bacter... 42 0.019
UniRef50_Q6AP53 Cluster: 30S ribosomal protein S5; n=8; Bacteria... 42 0.019
UniRef50_UPI0000E20F35 Cluster: PREDICTED: similar to ribosomal ... 41 0.025
UniRef50_Q7MTN0 Cluster: 30S ribosomal protein S5; n=32; Bacteri... 41 0.025
UniRef50_P73304 Cluster: 30S ribosomal protein S5; n=30; cellula... 40 0.044
UniRef50_A7CZB7 Cluster: Ribosomal protein S5; n=1; Opitutaceae ... 40 0.059
UniRef50_Q4FLN5 Cluster: 30S ribosomal protein S5; n=4; Ricketts... 39 0.10
UniRef50_A4S3U8 Cluster: Predicted protein; n=2; Ostreococcus|Re... 38 0.18
UniRef50_Q5L704 Cluster: 30S ribosomal protein S5; n=7; Chlamydi... 38 0.31
UniRef50_UPI000023F324 Cluster: hypothetical protein FG00649.1; ... 37 0.41
UniRef50_UPI0000DA3DCA Cluster: PREDICTED: similar to 40S riboso... 37 0.55
UniRef50_Q2GEC2 Cluster: 30S ribosomal protein S5; n=1; Neoricke... 36 0.72
UniRef50_Q4EF76 Cluster: Putative uncharacterized protein; n=1; ... 36 1.3
UniRef50_UPI0000D9EF8A Cluster: PREDICTED: similar to 40S riboso... 35 1.7
UniRef50_A7S8R4 Cluster: Predicted protein; n=1; Nematostella ve... 35 1.7
UniRef50_UPI000056598D Cluster: UPI000056598D related cluster; n... 35 2.2
UniRef50_A4JFF4 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_A2RAI1 Cluster: Remark: literature about the mitochondr... 34 3.9
UniRef50_UPI0000D9ACAD Cluster: PREDICTED: similar to 40S riboso... 33 5.1
UniRef50_A0Z6X2 Cluster: Sensor protein; n=1; marine gamma prote... 33 5.1
UniRef50_Q4RI35 Cluster: Chromosome 8 SCAF15044, whole genome sh... 33 6.7
UniRef50_Q9RS86 Cluster: Ribosomal protein S2-related protein; n... 33 6.7
UniRef50_Q9LVC2 Cluster: Genomic DNA, chromosome 5, P1 clone:MKN... 33 6.7
UniRef50_A4R1A2 Cluster: Putative uncharacterized protein; n=1; ... 33 6.7
UniRef50_P41846 Cluster: WBSCR14 protein homolog; n=2; Caenorhab... 33 6.7
>UniRef50_P15880 Cluster: 40S ribosomal protein S2; n=284;
Eukaryota|Rep: 40S ribosomal protein S2 - Homo sapiens
(Human)
Length = 293
Score = 176 bits (429), Expect = 4e-43
Identities = 92/134 (68%), Positives = 98/134 (73%)
Frame = -3
Query: 657 KXXKLXSIXLFSLPIKEFEDH*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFVAIGDN 478
K L I LFSLPIKE E F + K + FKAFVAIGD
Sbjct: 74 KIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDY 133
Query: 477 NGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 298
NGH+GLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCKVTG+CGSV V
Sbjct: 134 NGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLV 193
Query: 297 RLIPAPRGTGIVSA 256
RLIPAPRGTGIVSA
Sbjct: 194 RLIPAPRGTGIVSA 207
Score = 79.4 bits (187), Expect = 8e-14
Identities = 37/61 (60%), Positives = 40/61 (65%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKKLL MAG+ DCYTSARG T TLGNF YLTPDLW++ TKSPY E
Sbjct: 209 VPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQE 268
Query: 73 F 71
F
Sbjct: 269 F 269
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = -1
Query: 611 KNSKIIDFFLGPSLNDKVLKIMPVQKQTRAGQRT 510
K S+IIDFFLG SL D+VLKIMPVQKQTRAGQRT
Sbjct: 89 KESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRT 122
>UniRef50_O74892 Cluster: 40S ribosomal protein S2; n=5;
Eukaryota|Rep: 40S ribosomal protein S2 -
Schizosaccharomyces pombe (Fission yeast)
Length = 253
Score = 161 bits (392), Expect = 1e-38
Identities = 80/144 (55%), Positives = 102/144 (70%), Gaps = 2/144 (1%)
Frame = -3
Query: 657 KXXKLXSIXLFSLPIKEFE--DH*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFVAIG 484
K + I L+SLPIKE++ D+ FLPR E K + FKAFV IG
Sbjct: 48 KIKSIEEIYLYSLPIKEYQIVDY-FLPRLNDE--VMKVVPVQKQTRAGQRTRFKAFVVIG 104
Query: 483 DNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKCGSV 304
D++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG +G PHTVP KV+GKCGSV
Sbjct: 105 DSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSV 164
Query: 303 TVRLIPAPRGTGIVSAQFLRSFFR 232
TVRL+PAPRG G+V+A + F +
Sbjct: 165 TVRLVPAPRGAGLVAAPVTKRFLQ 188
Score = 62.9 bits (146), Expect = 7e-09
Identities = 27/61 (44%), Positives = 37/61 (60%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
V K+ LQ+AG++DCYT +RGST TLGNF LTP+LW + P ++P E
Sbjct: 182 VTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEE 241
Query: 73 F 71
+
Sbjct: 242 Y 242
>UniRef50_UPI00005A5FBC Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S2 - Canis familiaris
Length = 237
Score = 155 bits (376), Expect = 1e-36
Identities = 74/95 (77%), Positives = 81/95 (85%), Gaps = 1/95 (1%)
Frame = -3
Query: 537 ETNTCRTAHT-FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGN 361
+ TC T F AFVAIGD NGH GLGVKCSKEVATAIR AIILAKLS++P+R+GYWGN
Sbjct: 57 QKQTCAGQRTRFTAFVAIGDYNGHFGLGVKCSKEVATAIREAIILAKLSIVPLRQGYWGN 116
Query: 360 KIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 256
KIGKP+TVPCKVTG CGSV V LIPAPRGTG+VSA
Sbjct: 117 KIGKPNTVPCKVTGHCGSVLVCLIPAPRGTGMVSA 151
Score = 74.9 bits (176), Expect = 2e-12
Identities = 35/61 (57%), Positives = 39/61 (63%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKKLL MAG+ DCYTSAR T +LGNF YLTPDLW++ TKSPY E
Sbjct: 153 VPKKLLMMAGIDDCYTSARDCTASLGNFAKATFDTISKTYTYLTPDLWKETVFTKSPYEE 212
Query: 73 F 71
F
Sbjct: 213 F 213
Score = 37.1 bits (82), Expect = 0.41
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -1
Query: 566 DKVLKIMPVQKQTRAGQRT 510
D+VLKIMPVQKQT AGQRT
Sbjct: 48 DEVLKIMPVQKQTCAGQRT 66
>UniRef50_UPI0000D9B7B9 Cluster: PREDICTED: similar to ribosomal
protein S2; n=1; Macaca mulatta|Rep: PREDICTED: similar
to ribosomal protein S2 - Macaca mulatta
Length = 272
Score = 154 bits (374), Expect = 2e-36
Identities = 84/131 (64%), Positives = 89/131 (67%), Gaps = 5/131 (3%)
Frame = -3
Query: 657 KXXKLXSIXLFSLPIKEFEDH*FLPRPVPE**GSKDHAC----TETNTCRTAHT-FKAFV 493
K L I LFSLPIKE E F KD + TC HT FKAFV
Sbjct: 14 KIKSLEEIYLFSLPIKESEIIDFFLGA-----SLKDEVLKIMPVQKQTCAGQHTRFKAFV 68
Query: 492 AIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKC 313
IGD NGH+GL VKCSKEVATAIRGAIILAKLS++PV RGYWGNKIGKPHTVPCKVTG+C
Sbjct: 69 PIGDYNGHVGLSVKCSKEVATAIRGAIILAKLSIVPVCRGYWGNKIGKPHTVPCKVTGRC 128
Query: 312 GSVTVRLIPAP 280
SV V LIPAP
Sbjct: 129 SSVLVHLIPAP 139
>UniRef50_UPI00005A548A Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S2 - Canis familiaris
Length = 213
Score = 151 bits (367), Expect = 1e-35
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
FKAFVAIGD+NG +G GVKCSKE ATAIRGA+ILAKLS+LPV RGYWGN+I KPHTVP K
Sbjct: 64 FKAFVAIGDDNGQVGPGVKCSKEAATAIRGAVILAKLSILPVPRGYWGNEIRKPHTVPGK 123
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSA 256
VTG+CGSV VRLIPAPRGTG VSA
Sbjct: 124 VTGRCGSVLVRLIPAPRGTGFVSA 147
Score = 46.8 bits (106), Expect = 5e-04
Identities = 20/26 (76%), Positives = 21/26 (80%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLG 176
VPKKLL MAG+ DCYTSARG T T G
Sbjct: 149 VPKKLLMMAGIDDCYTSARGHTATWG 174
>UniRef50_A4S964 Cluster: Cytosolic 80S ribosomal protein S2;
Cytosolic 40S small ribosomal subunit protein S2; n=12;
Eukaryota|Rep: Cytosolic 80S ribosomal protein S2;
Cytosolic 40S small ribosomal subunit protein S2 -
Ostreococcus lucimarinus CCE9901
Length = 273
Score = 146 bits (353), Expect = 6e-34
Identities = 79/149 (53%), Positives = 102/149 (68%), Gaps = 2/149 (1%)
Frame = -3
Query: 696 PCHQIRPFLFAKEKXXKLXSIXLFSLPIKEFE--DH*FLPRPVPE**GSKDHACTETNTC 523
PC ++ L + K L I LFSLPIKE + +H F+ + + K + T
Sbjct: 52 PCTKLGR-LVQQGKIKSLEHIFLFSLPIKEHQIVEH-FIGGELKDE-VMKICPVQKQTTA 108
Query: 522 RTAHTFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPH 343
FKAFV +GD NGHIGLGVK KEVA +I+G++ILAKL+++PVRRGYWG+K+G+PH
Sbjct: 109 GQRMRFKAFVVVGDCNGHIGLGVKACKEVAHSIQGSMILAKLNIVPVRRGYWGSKLGEPH 168
Query: 342 TVPCKVTGKCGSVTVRLIPAPRGTGIVSA 256
T+P KV GKCGSV VRLIPAPRG GIV++
Sbjct: 169 TIPTKVHGKCGSVHVRLIPAPRGAGIVAS 197
Score = 52.4 bits (120), Expect = 1e-05
Identities = 26/59 (44%), Positives = 31/59 (52%)
Frame = -2
Query: 247 KKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 71
KK+L MAG+ D YT +RG T TLGN +LTPDLW + K P EF
Sbjct: 201 KKVLAMAGLHDVYTCSRGHTRTLGNSVKATYEALKNSYGFLTPDLWAETRFAKPPAQEF 259
>UniRef50_P25443 Cluster: 40S ribosomal protein S2; n=26;
Eukaryota|Rep: 40S ribosomal protein S2 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 254
Score = 138 bits (334), Expect = 1e-31
Identities = 72/143 (50%), Positives = 94/143 (65%), Gaps = 1/143 (0%)
Frame = -3
Query: 657 KXXKLXSIXLFSLPIKEFED-H*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFVAIGD 481
K + I L SLP+KEF+ LP E K RT FKA V +GD
Sbjct: 49 KITTIEEIFLHSLPVKEFQIIDTLLPGLQDEVMNIKPVQKQTRAGQRTR--FKAVVVVGD 106
Query: 480 NNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKCGSVT 301
+NGH+GLG+K +KEVA AIR II+AKLS++P+RRGYWG +G+PH++ K TGKCGSVT
Sbjct: 107 SNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVT 166
Query: 300 VRLIPAPRGTGIVSAQFLRSFFR 232
VRLIPAPRG+GIV++ ++ +
Sbjct: 167 VRLIPAPRGSGIVASPAVKKLLQ 189
Score = 50.0 bits (114), Expect = 5e-05
Identities = 25/55 (45%), Positives = 31/55 (56%)
Frame = -2
Query: 247 KKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 83
KKLLQ+AGV+D YT + G T TL N +LTP+LW + PL SP
Sbjct: 185 KKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNLWAEQPLPVSP 239
Score = 43.2 bits (97), Expect = 0.006
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = -1
Query: 611 KNSKIIDFFLGPSLNDKVLKIMPVQKQTRAGQRT 510
K +IID L P L D+V+ I PVQKQTRAGQRT
Sbjct: 64 KEFQIIDTLL-PGLQDEVMNIKPVQKQTRAGQRT 96
>UniRef50_Q8SRG6 Cluster: 40S RIBOSOMAL PROTEIN S2; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S2 -
Encephalitozoon cuniculi
Length = 242
Score = 115 bits (276), Expect = 1e-24
Identities = 51/90 (56%), Positives = 63/90 (70%)
Frame = -3
Query: 504 KAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKV 325
KA V +GD GH+G+G K SKE A+AIRGAI AK ++ PVR G W GKPHTV CK
Sbjct: 86 KAVVVVGDRKGHVGIGTKASKEAASAIRGAIARAKCAIRPVRLGLWDGAQGKPHTVSCKG 145
Query: 324 TGKCGSVTVRLIPAPRGTGIVSAQFLRSFF 235
+GKCG+ V++IPAPRGTGI+S + F
Sbjct: 146 SGKCGTSVVQVIPAPRGTGIISGSVNKKIF 175
Score = 46.0 bits (104), Expect = 9e-04
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = -2
Query: 256 AVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYS 77
+V KK+ ++AG++D YT + G+T T NF + PD W + P T +P
Sbjct: 169 SVNKKIFELAGIKDLYTLSFGATSTTENFAKASIAALEATSSMILPDQWEEKPRTLNPLL 228
Query: 76 EF 71
EF
Sbjct: 229 EF 230
Score = 40.3 bits (90), Expect = 0.044
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -1
Query: 626 FLYQSKNSKIIDFFLGPSLNDKVLKIMPVQKQTRAGQRT 510
F + + +I+D G S+ ++VL I VQKQTRAGQ+T
Sbjct: 45 FSHVIREPEIVDLLCGNSIKEEVLSIKSVQKQTRAGQKT 83
>UniRef50_Q3LVZ1 Cluster: Ribosomal protein S2; n=1; Bigelowiella
natans|Rep: Ribosomal protein S2 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 266
Score = 93.5 bits (222), Expect = 4e-18
Identities = 42/85 (49%), Positives = 60/85 (70%)
Frame = -3
Query: 504 KAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKV 325
K V +GD +GH+GLGVK S + I+ A+ AKL++ +RRGYW + GKP+T+ K
Sbjct: 131 KVAVLVGDLDGHVGLGVKSSMDSKAGIKAALRKAKLAITKIRRGYWEIEEGKPNTIKYKT 190
Query: 324 TGKCGSVTVRLIPAPRGTGIVSAQF 250
+GK GSV V + PAP+GTGIV+++F
Sbjct: 191 SGKAGSVVVCIKPAPKGTGIVASKF 215
>UniRef50_UPI000057EB46 Cluster: UPI000057EB46 related cluster; n=1;
Bos taurus|Rep: UPI000057EB46 UniRef100 entry - Bos
Taurus
Length = 258
Score = 93.1 bits (221), Expect = 6e-18
Identities = 51/92 (55%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Frame = -3
Query: 528 TCRTAHT-FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIG 352
TC T FKA V +G + GH+ LG+K S EVA IILAKLS++PV G ++
Sbjct: 100 TCTDQQTRFKASVTVG-SYGHVSLGIKYSMEVA------IILAKLSIIPVETATGGKRL- 151
Query: 351 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 256
+PH VPC+VTG+CGS+ V LIPAPRGTG VSA
Sbjct: 152 EPHMVPCRVTGRCGSLLVHLIPAPRGTGTVSA 183
Score = 41.9 bits (94), Expect = 0.015
Identities = 27/66 (40%), Positives = 32/66 (48%)
Frame = -2
Query: 262 VCAVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 83
V A KLL MAG+ D +SA G T TLGNF YL PDL ++ KS
Sbjct: 181 VSAPVPKLLMMAGIDDS-SSASGCTATLGNFTKAIFDTISKTHSYLIPDLQKETVFAKSL 239
Query: 82 YSEFKV 65
Y +V
Sbjct: 240 YQNSRV 245
>UniRef50_UPI0000DC060C Cluster: UPI0000DC060C related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC060C UniRef100 entry -
Rattus norvegicus
Length = 206
Score = 89.8 bits (213), Expect = 6e-17
Identities = 63/137 (45%), Positives = 77/137 (56%), Gaps = 1/137 (0%)
Frame = -3
Query: 663 KEKXXKLXSIXLFSLPIKEFED-H*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFVAI 487
K++ L I LFSLPIKE E FL + + + E R +KA
Sbjct: 60 KDEIKSLGEIYLFSLPIKETEIIDIFLGAALKD---EVLKSLPEQKGTRVGQYYKA---- 112
Query: 486 GDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKCGS 307
GD NGH+ G+ EVA I+ IIL KL ++PV RGY G+K KPHTV CKVTG GS
Sbjct: 113 GDYNGHVITGLD---EVANTIQRVIILTKLPIVPVWRGYCGSKTSKPHTVLCKVTGH-GS 168
Query: 306 VTVRLIPAPRGTGIVSA 256
V++ LIPAPR T I SA
Sbjct: 169 VSLHLIPAPRDTVISSA 185
Score = 38.3 bits (85), Expect = 0.18
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARG 194
+PKKLL MAG+ DC+TSARG
Sbjct: 187 MPKKLLMMAGINDCHTSARG 206
>UniRef50_Q6LXD3 Cluster: 30S ribosomal protein S5P; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S5P -
Methanococcus maripaludis
Length = 225
Score = 88.2 bits (209), Expect = 2e-16
Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGY--WGNKIGKPHTVP 334
++A V +G+ NG++G+G+ SKEV AIR AI AKLSL+ VR G W G PH++P
Sbjct: 79 YRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIP 138
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
G CGSV V L+PAPRG G+V+ ++
Sbjct: 139 FTAKGACGSVKVELLPAPRGVGLVAGNVAKA 169
>UniRef50_Q8U017 Cluster: 30S ribosomal protein S5P; n=34;
Archaea|Rep: 30S ribosomal protein S5P - Pyrococcus
furiosus
Length = 236
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGY--WGNKIGKPHTVP 334
F+ A+G+ +G++GLG+ KEV AIR AI AKL+++ ++RG W + +PH+VP
Sbjct: 83 FRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVP 142
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIV 262
V GK GSV VRLIP PRG G+V
Sbjct: 143 FAVEGKEGSVRVRLIPGPRGLGLV 166
>UniRef50_UPI0000EB449D Cluster: UPI0000EB449D related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB449D UniRef100
entry - Canis familiaris
Length = 196
Score = 83.8 bits (198), Expect = 4e-15
Identities = 49/92 (53%), Positives = 56/92 (60%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
FKAFV D NGH+ L EVATAIRGAIIL + S+ G+ GNKI KPHTV C+
Sbjct: 30 FKAFVVFRDYNGHVSL------EVATAIRGAIILDRSSIAIAWGGWSGNKIAKPHTVSCR 83
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSAQFLRSFFR 232
VT SV V I APRGT I+SA + R
Sbjct: 84 VTRLYCSVLVHHISAPRGTDILSAPVPKKLLR 115
Score = 33.5 bits (73), Expect = 5.1
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 107
VPKKLL+MA + D + ARG T L N LT D WR
Sbjct: 109 VPKKLLRMASIDDGDSLARGCTAILDN-VIKATYDISKTYVSLTSDFWR 156
>UniRef50_Q9UX87 Cluster: 30S ribosomal protein S5P; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S5P -
Sulfolobus solfataricus
Length = 214
Score = 83.8 bits (198), Expect = 4e-15
Identities = 39/95 (41%), Positives = 63/95 (66%), Gaps = 2/95 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGY--WGNKIGKPHTVP 334
+K V +G+ +G++ +G +K++ AI+ AI AK++++PVRRG W G+PH++P
Sbjct: 76 YKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCGEPHSLP 135
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVSAQFLRSFFRW 229
KV GK GSV V L+PAP+GTG+V L++ +
Sbjct: 136 FKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTY 170
>UniRef50_UPI0000DBFACC Cluster: UPI0000DBFACC related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBFACC UniRef100 entry -
Rattus norvegicus
Length = 172
Score = 79.8 bits (188), Expect = 6e-14
Identities = 46/89 (51%), Positives = 53/89 (59%)
Frame = -3
Query: 504 KAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKV 325
K F GD NGH+GLG+KCSKEVATA +G + K+ L R + + V KV
Sbjct: 13 KTFCCYGDYNGHVGLGIKCSKEVATAFQG--LWVKMQLGETR-------LSRSTLVQYKV 63
Query: 324 TGKCGSVTVRLIPAPRGTGIVSAQFLRSF 238
T GSV V LIPAPRGTGIVSA L F
Sbjct: 64 TSHYGSVLVHLIPAPRGTGIVSAPVLTKF 92
>UniRef50_Q9DC49 Cluster: Adult male lung cDNA, RIKEN full-length
enriched library, clone:1200003H09 product:ribosomal
protein S2, full insert sequence; n=13; Eutheria|Rep:
Adult male lung cDNA, RIKEN full-length enriched
library, clone:1200003H09 product:ribosomal protein S2,
full insert sequence - Mus musculus (Mouse)
Length = 235
Score = 79.4 bits (187), Expect = 8e-14
Identities = 37/61 (60%), Positives = 40/61 (65%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKKLL MAG+ DCYTSARG T TLGNF YLTPDLW++ TKSPY E
Sbjct: 151 VPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQE 210
Query: 73 F 71
F
Sbjct: 211 F 211
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = -1
Query: 611 KNSKIIDFFLGPSLNDKVLKIMPVQKQTRAGQRT 510
K S+IIDFFLG SL D+VLKIMPVQKQTRAGQRT
Sbjct: 89 KESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRT 122
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -3
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSA 256
KVTG+CGSV VRLIPAPRGTGIVSA
Sbjct: 125 KVTGRCGSVLVRLIPAPRGTGIVSA 149
>UniRef50_Q9BSW5 Cluster: RPS2 protein; n=26; Coelomata|Rep: RPS2
protein - Homo sapiens (Human)
Length = 97
Score = 79.4 bits (187), Expect = 8e-14
Identities = 37/61 (60%), Positives = 40/61 (65%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKKLL MAG+ DCYTSARG T TLGNF YLTPDLW++ TKSPY E
Sbjct: 13 VPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQE 72
Query: 73 F 71
F
Sbjct: 73 F 73
>UniRef50_Q6L1A7 Cluster: 30S ribosomal protein S5P; n=7;
Archaea|Rep: 30S ribosomal protein S5P - Picrophilus
torridus
Length = 221
Score = 78.6 bits (185), Expect = 1e-13
Identities = 46/132 (34%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Frame = -3
Query: 621 LPIKEFEDH*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFVAIGDNNGHIGLGVKCSK 442
LP+KE++ +L + + + + A T++ R + + +G+ NG++G+G +K
Sbjct: 31 LPLKEYQIVDYLIPDLKDEVINIERAQRMTDSGRRMN-YSITAVVGNGNGYVGVGRGKAK 89
Query: 441 EVATAIRGAIILAKLSLLPVRRGY--WGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTG 268
E A AI+ AI AKL+++ ++RG W GKPHT+P V GK GSV+V L PAP+G G
Sbjct: 90 EAAPAIKKAIDNAKLNIIEIKRGCGSWECGCGKPHTLPFLVNGKSGSVSVTLKPAPQGVG 149
Query: 267 IVSAQFLRSFFR 232
+ ++ R
Sbjct: 150 LAVGDVVKVILR 161
>UniRef50_A7DRN6 Cluster: Ribosomal protein S5; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S5
- Candidatus Nitrosopumilus maritimus SCM1
Length = 238
Score = 77.8 bits (183), Expect = 2e-13
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGY--WGNKIGKPHTVP 334
FKA VA G+ NG++G+G SK++ AI A A L++ P++ G W + + H+VP
Sbjct: 109 FKAIVATGNENGYLGIGQGKSKQMRIAIEKATNAAYLNVNPIKMGCGSWECRCDQKHSVP 168
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVS 259
KV GK GSVT+ +IPAPRG G+V+
Sbjct: 169 FKVKGKGGSVTIEIIPAPRGLGLVA 193
Score = 33.1 bits (72), Expect = 6.7
Identities = 12/25 (48%), Positives = 22/25 (88%)
Frame = -2
Query: 247 KKLLQMAGVQDCYTSARGSTGTLGN 173
K+LL++AG++D +T+A+GST T+ +
Sbjct: 198 KRLLELAGLKDAWTTAKGSTPTMNS 222
>UniRef50_Q74MD4 Cluster: 30S ribosomal protein S5P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S5P -
Nanoarchaeum equitans
Length = 231
Score = 77.0 bits (181), Expect = 4e-13
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGY--WGNKIGKPHTVP 334
++ +GD +GH+G+G+ S ++ A AI AKL+++ V RG W G PH++P
Sbjct: 83 YEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIP 142
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVSAQFLRSFFR 232
+V GK GSV V L PAP+G GIV+ ++ FR
Sbjct: 143 YQVEGKSGSVRVILKPAPKGVGIVADDEIKKIFR 176
>UniRef50_Q673Q8 Cluster: Ribosomal protein S5; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein S5 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 202
Score = 75.8 bits (178), Expect = 1e-12
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRR--GYWGNKIGKPHTVP 334
F +G+++G++GL + KEVA+ IR AI AKL+++PV R G W + G +VP
Sbjct: 55 FNVLCVVGNSDGYVGLAICKGKEVASTIRKAIDKAKLNMIPVMRGNGSWESGGGPGTSVP 114
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVSAQFLR 244
K+TG+ GS V L+PAP G G+V + + R
Sbjct: 115 LKITGRSGSTRVTLMPAPAGKGLVVSDYGR 144
>UniRef50_A0RUE7 Cluster: 30S ribosomal protein S5P; n=1;
Cenarchaeum symbiosum|Rep: 30S ribosomal protein S5P -
Cenarchaeum symbiosum
Length = 219
Score = 72.5 bits (170), Expect = 9e-12
Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGY--WGNKIGKPHTVP 334
FKA VA G+ NG++G+G +K++ AI A A L++ P++ G W + + H+VP
Sbjct: 90 FKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVP 149
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVSAQFLR 244
KV GK GSV + ++PAPRG G+V+ +R
Sbjct: 150 FKVRGKGGSVVIEILPAPRGLGLVAGGKIR 179
Score = 32.7 bits (71), Expect = 8.9
Identities = 12/22 (54%), Positives = 20/22 (90%)
Frame = -2
Query: 247 KKLLQMAGVQDCYTSARGSTGT 182
++LL++AG++D YT+A+GST T
Sbjct: 179 RRLLELAGLKDAYTTAKGSTPT 200
>UniRef50_P26815 Cluster: 30S ribosomal protein S5P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S5P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 212
Score = 72.1 bits (169), Expect = 1e-11
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGY--WGNKIGKPHTVP 334
F+ VA+G+ +G IG +V AI+ AI +AKL+++ V RG W G+PHTV
Sbjct: 70 FRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIAKLNIIDVSRGCGSWECGCGRPHTVA 129
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVSAQFLR 244
+ GK GSV V L PAPRG G+ + +R
Sbjct: 130 LRTEGKAGSVEVELQPAPRGLGLAGGETVR 159
>UniRef50_UPI0000500CC2 Cluster: ribosomal protein S2; n=8;
Eutheria|Rep: ribosomal protein S2 - Rattus norvegicus
Length = 233
Score = 70.1 bits (164), Expect = 5e-11
Identities = 35/61 (57%), Positives = 38/61 (62%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKKLL MA + DCYT ARG T TLGNF YLTPDLW++ TKSPY E
Sbjct: 151 VPKKLLMMA-IDDCYTLARGCTATLGNFAKATFDAISKIYSYLTPDLWKETVFTKSPYQE 209
Query: 73 F 71
F
Sbjct: 210 F 210
Score = 54.4 bits (125), Expect = 3e-06
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = -1
Query: 611 KNSKIIDFFLGPSLNDKVLKIMPVQKQTRAGQRT 510
K S+IIDFFLG SL ++VLK MPVQKQTRAGQ T
Sbjct: 89 KGSEIIDFFLGASLKNEVLKTMPVQKQTRAGQWT 122
Score = 46.4 bits (105), Expect = 7e-04
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -3
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSA 256
KVTG+CGSV VRL APRGTGIVSA
Sbjct: 125 KVTGRCGSVLVRLFSAPRGTGIVSA 149
>UniRef50_UPI0000DC004A Cluster: UPI0000DC004A related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC004A UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 68.1 bits (159), Expect = 2e-10
Identities = 38/68 (55%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = -3
Query: 456 VKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTG-KCGSVTVRLIPAP 280
V CSKEV TA + AI L L + GY GNKIG PHT+PC VT + V V L AP
Sbjct: 94 VNCSKEVGTAAQRAITLLSF-LFSTQTGYKGNKIGNPHTIPCDVTATEKNLVLVCLTTAP 152
Query: 279 RGTGIVSA 256
RGTG VSA
Sbjct: 153 RGTGTVSA 160
>UniRef50_A7D107 Cluster: Ribosomal protein S5; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein S5 -
Halorubrum lacusprofundi ATCC 49239
Length = 265
Score = 67.3 bits (157), Expect = 3e-10
Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGY--WGNKIGKPHTVP 334
F+ VA+G+ +G++G +V AI+ AI +AKL+++ V RG W ++ G +++
Sbjct: 121 FRCVVAVGNRDGYLGYAQARDDQVGGAIQKAIDVAKLNIIEVDRGSGSWEDQPGGTNSLT 180
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
K GK GSVTV + PAP+G G+ +A+ +R+
Sbjct: 181 RKAEGKAGSVTVEIQPAPQGLGLAAAETVRN 211
>UniRef50_Q6CKL2 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome F of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 262
Score = 65.3 bits (152), Expect = 1e-09
Identities = 35/82 (42%), Positives = 51/82 (62%)
Frame = +1
Query: 265 NSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*KRQLSKDNSASNGSGDFL 444
++ T+ NQ + TTL L GV L+ + TPVTSS+W QL D++ S+G+ +FL
Sbjct: 79 DTGTSWSWNQSNGNGTTLTRGLGSQGVRLTQVGTPVTSSDWDNGQLGDDDTGSDGTSNFL 138
Query: 445 AALXTQTNMTVVVANGNKCLES 510
+ L TQT++TV V N + LES
Sbjct: 139 SGLNTQTDVTVGVTNDDDSLES 160
>UniRef50_UPI0000DC0CDD Cluster: RBM27_MOUSE Isoform 2 of Q5SFM8 -
Mus musculus (Mouse); n=3; Murinae|Rep: RBM27_MOUSE
Isoform 2 of Q5SFM8 - Mus musculus (Mouse) - Rattus
norvegicus
Length = 266
Score = 64.1 bits (149), Expect = 3e-09
Identities = 31/61 (50%), Positives = 36/61 (59%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKKLL +A + DCYTSARG T TL NF YLTP+LW+ + KS Y E
Sbjct: 190 VPKKLLLLANIDDCYTSARGCTATLDNFDKATFNAISNTYSYLTPNLWKGLVFAKSTYLE 249
Query: 73 F 71
F
Sbjct: 250 F 250
Score = 52.8 bits (121), Expect = 8e-06
Identities = 38/94 (40%), Positives = 51/94 (54%)
Frame = -3
Query: 537 ETNTCRTAHTFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNK 358
+T T + FK FV+I D + H+ L KCSK+ ATAI + V +G +
Sbjct: 109 QTQTWLPSRPFKDFVSIRDYSSHVDLDDKCSKKTATAI-----------VLVWKGTRETR 157
Query: 357 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 256
+G TV CKVTG+C SV + LIP R I+SA
Sbjct: 158 LGS-LTVSCKVTGQCVSVLICLIPPTR--NIISA 188
>UniRef50_O55213 Cluster: Ribosomal protein S2; n=11; Coelomata|Rep:
Ribosomal protein S2 - Rattus norvegicus (Rat)
Length = 121
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/58 (56%), Positives = 40/58 (68%)
Frame = -1
Query: 611 KNSKIIDFFLGPSLNDKVLKIMPVQKQTRAGQRTLSRHLLPLATTTVILVWVXSAARK 438
K S+IIDFFLG SL D+VLKIMPVQKQTRAGQRT + + + + V SA R+
Sbjct: 64 KESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLVLSAPRR 121
>UniRef50_UPI0000502977 Cluster: UPI0000502977 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000502977 UniRef100 entry -
Rattus norvegicus
Length = 140
Score = 60.5 bits (140), Expect = 4e-08
Identities = 29/37 (78%), Positives = 29/37 (78%)
Frame = -3
Query: 366 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 256
GNKIGK H V CKVTG CGSV V LIPA RGTGI SA
Sbjct: 7 GNKIGKTHIVLCKVTGCCGSVLVHLIPAHRGTGISSA 43
Score = 41.1 bits (92), Expect = 0.025
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNF 170
VP K L MAG+ DCYTSARG T +L F
Sbjct: 45 VPTKPLMMAGIDDCYTSARGCTASLDYF 72
>UniRef50_Q8TBR1 Cluster: MGC27348 protein; n=1; Homo sapiens|Rep:
MGC27348 protein - Homo sapiens (Human)
Length = 172
Score = 58.8 bits (136), Expect = 1e-07
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = -1
Query: 611 KNSKIIDFFLGPSLNDKVLKIMPVQKQTRAGQRT 510
K S+IIDFFLG SL D+VLKIMPV+K+TRAGQRT
Sbjct: 17 KESEIIDFFLGASLKDEVLKIMPVRKETRAGQRT 50
Score = 45.2 bits (102), Expect = 0.002
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = -2
Query: 484 RQQRSYWFGCXVQQGSRHCHSRRYYPC*VVSFTSSKRLLG*QDRKATHRPLQGHRQVWFC 305
R Y V QG H R ++P + ++RLLG QDR+A HRPLQG R + C
Sbjct: 59 RDYNGYAGRVEVLQGGGRRHPRGHHPDQALHCHRAQRLLGEQDRQAPHRPLQGDRPLRLC 118
Query: 304 NSPADSCPSWYWN 266
+W+
Sbjct: 119 AGALHPRAQGHWH 131
>UniRef50_Q7XYL2 Cluster: Ribosomal protein rpS5; n=1; Bigelowiella
natans|Rep: Ribosomal protein rpS5 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 219
Score = 57.2 bits (132), Expect = 4e-07
Identities = 34/99 (34%), Positives = 55/99 (55%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F+A VA+GD NG IGLG +KEV A+ A + AK + + V I K +++P +
Sbjct: 93 FRALVAVGDKNGKIGLGCASAKEVMVAVEKASMEAKKTAITV-------PITKDYSLPHR 145
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSAQFLRSFFRWLVYRTA 211
+ + G+ +V + PA GTG+V+ +R+ Y+ A
Sbjct: 146 LDVEWGAASVMMKPASVGTGLVAGGAVRTILELAGYQNA 184
>UniRef50_Q16TN2 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 181
Score = 57.2 bits (132), Expect = 4e-07
Identities = 29/62 (46%), Positives = 43/62 (69%)
Frame = +1
Query: 325 DLARDGVWLSDLVTPVTSSNW*KRQLSKDNSASNGSGDFLAALXTQTNMTVVVANGNKCL 504
+LA GV +DLVTPV S++ QL +D+S ++G G FLAAL QT++ V V +G++ L
Sbjct: 18 NLAGHGVGFTDLVTPVASTHRNNGQLGQDDSPTDGGGHFLAALDAQTDVAVAVTDGDEGL 77
Query: 505 ES 510
E+
Sbjct: 78 EA 79
Score = 32.7 bits (71), Expect = 8.9
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 516 LSGTCLFLYRHDL*NLIIQGRAEEEINDLRI 608
L+GT L L HDL + ++Q A+EEI+DL +
Sbjct: 82 LTGTGLLLDGHDLQHFVLQRAAQEEIDDLEL 112
>UniRef50_P59123 Cluster: 30S ribosomal protein S5; n=22;
Bacteria|Rep: 30S ribosomal protein S5 - Oceanobacillus
iheyensis
Length = 167
Score = 54.8 bits (126), Expect = 2e-06
Identities = 33/89 (37%), Positives = 51/89 (57%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F A V +GD NGH+G G ++EV AI+ A+ AK +L+ V +G T+P +
Sbjct: 34 FAALVVVGDKNGHVGFGTGKAQEVPEAIKKAVDDAKKNLISV------PIVGT--TIPHE 85
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
+ G+ GS V + PA GTG++S +R+
Sbjct: 86 IHGQFGSGNVLMKPAAEGTGVISGGPVRA 114
>UniRef50_Q9PQP3 Cluster: 30S ribosomal protein S5; n=2;
Firmicutes|Rep: 30S ribosomal protein S5 - Ureaplasma
parvum (Ureaplasma urealyticum biotype 1)
Length = 203
Score = 54.4 bits (125), Expect = 3e-06
Identities = 34/89 (38%), Positives = 50/89 (56%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F A V IGD NG +G G+ S EV AI+ AI A +L+ V++ K ++
Sbjct: 71 FSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQ-------TKKGSIYHD 123
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
V G+ G+ V L+PAP GTGI++ +R+
Sbjct: 124 VNGRHGAAKVMLLPAPEGTGIIAGGPVRA 152
>UniRef50_Q8RIH3 Cluster: 30S ribosomal protein S5; n=3;
Fusobacterium nucleatum|Rep: 30S ribosomal protein S5 -
Fusobacterium nucleatum subsp. nucleatum
Length = 164
Score = 53.6 bits (123), Expect = 4e-06
Identities = 30/89 (33%), Positives = 48/89 (53%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPC 331
+F A+GD G IGLG+ + V AIR AI AK +++ + K +T+P
Sbjct: 30 SFSVLAAVGDGEGKIGLGLGKANGVPDAIRKAIAAAKKNIVKISL--------KNNTIPH 81
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSAQFLR 244
++ GK G+ T+ + PA GTG+++ R
Sbjct: 82 EIAGKWGATTLWMAPAYEGTGVIAGSASR 110
>UniRef50_Q8EUD0 Cluster: 30S ribosomal protein S5; n=3;
Mycoplasma|Rep: 30S ribosomal protein S5 - Mycoplasma
penetrans
Length = 234
Score = 52.8 bits (121), Expect = 8e-06
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F A IGD G++G G+ S EV AIR A+ AK ++ V K+ K T+ +
Sbjct: 100 FSALAVIGDRKGNVGFGLGKSIEVPVAIRKALKSAKNNMYKV-------KMNKNFTLYHE 152
Query: 327 VTGKCGSVTVRLIPAPRGTGIVS 259
V GK G+ V + PAP+GTG+++
Sbjct: 153 VIGKHGAGKVLIKPAPKGTGVIA 175
>UniRef50_Q9XD19 Cluster: 30S ribosomal protein S5; n=17;
Bacteria|Rep: 30S ribosomal protein S5 - Leptospira
interrogans
Length = 187
Score = 52.8 bits (121), Expect = 8e-06
Identities = 33/90 (36%), Positives = 47/90 (52%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPC 331
+F A +GD G +G+G + EV AIR +I AK L+ + K HT+P
Sbjct: 51 SFNALSVVGDQRGKVGIGFGKANEVPDAIRKSIESAKKHLVKINF--------KGHTIPH 102
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
+V GK S V L P+ GTGI++ +RS
Sbjct: 103 EVIGKFKSARVILKPSTAGTGIIAGASVRS 132
>UniRef50_Q7Y258 Cluster: Ribosomal protein S5 precursor; n=1;
Chlamydomonas reinhardtii|Rep: Ribosomal protein S5
precursor - Chlamydomonas reinhardtii
Length = 673
Score = 51.6 bits (118), Expect = 2e-05
Identities = 28/89 (31%), Positives = 50/89 (56%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F+ IG+ NG +G+G + +EVATA++ A++ AK S++ V + T+P +
Sbjct: 535 FRCTAIIGNGNGLVGVGCQAGREVATAVKRALVDAKKSVVRV-------PLVGAGTIPHR 587
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
V K + ++PA GTG+++ +RS
Sbjct: 588 VEAKFNAARCVMVPAADGTGVLAGSSIRS 616
>UniRef50_Q7NEG9 Cluster: 30S ribosomal protein S5; n=34; cellular
organisms|Rep: 30S ribosomal protein S5 - Gloeobacter
violaceus
Length = 223
Score = 51.2 bits (117), Expect = 2e-05
Identities = 26/90 (28%), Positives = 52/90 (57%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPC 331
+F+A + +GD NG +G+GV + +V A++ + A+ +L+ V + K +++P
Sbjct: 87 SFRAVIVVGDGNGRVGVGVGKANDVIGAVKKGVSDARKALIRV-------PLNKINSIPH 139
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
++G G+ V L PA GTG+++ +R+
Sbjct: 140 PMSGSSGAANVFLKPASGGTGVIAGGAVRT 169
>UniRef50_A0CLK5 Cluster: Chromosome undetermined scaffold_20, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_20,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 337
Score = 50.8 bits (116), Expect = 3e-05
Identities = 27/89 (30%), Positives = 45/89 (50%)
Frame = -3
Query: 540 TETNTCRTAHTFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGN 361
T+ T + ++F+ + IG+ NG IG G K+ TA+R A + A+ +L+P+ W
Sbjct: 176 TQVTTLQRINSFRQLIFIGNGNGVIGYGKGKGKDFETALRRAKVDAQRNLVPISLDLW-- 233
Query: 360 KIGKPHTVPCKVTGKCGSVTVRLIPAPRG 274
HT P +TG+ + + P P G
Sbjct: 234 -----HTCPIPLTGRFNDAEIEINPRPLG 257
>UniRef50_O67563 Cluster: 30S ribosomal protein S5; n=5;
Bacteria|Rep: 30S ribosomal protein S5 - Aquifex
aeolicus
Length = 208
Score = 50.8 bits (116), Expect = 3e-05
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLL--PVRRGYWGNKIGKPHTV 337
+F V +GD GH+G G +KEV AI I AK +++ P+ G TV
Sbjct: 49 SFSTLVVVGDRKGHVGFGHGKAKEVTLAIAKGIEKAKKNVIRVPIVDG----------TV 98
Query: 336 PCKVTGKCGSVTVRLIPAPRGTGIVSAQFLRSFFRWLVYRTATPQLVVQLAP 181
P V G G+ + ++PA RGTG+V+ + F Y +++ P
Sbjct: 99 PHDVIGTFGATKIIVLPARRGTGVVAGGAAKPVFELAGYTDVLTKIIGSTNP 150
>UniRef50_UPI0000D62CF0 Cluster: UPI0000D62CF0 related cluster; n=1;
Mus musculus|Rep: UPI0000D62CF0 UniRef100 entry - Mus
musculus
Length = 215
Score = 50.4 bits (115), Expect = 4e-05
Identities = 25/58 (43%), Positives = 31/58 (53%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPY 80
VP+KL+ A + CYTSAR T TLGN TP+LW++ TKSPY
Sbjct: 133 VPRKLMLRASIDSCYTSARSYTVTLGNIAKATFDAVSKTSHS-TPNLWKEAVFTKSPY 189
Score = 47.6 bits (108), Expect = 3e-04
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKL-SLLPVRRGYWGNKIGKPHTVPC 331
F +F I + GH G+GVKCSK+V TA+ + + L S LP R Y GN I KP T PC
Sbjct: 55 FNSFDTI-NYGGHNGIGVKCSKKVGTAVGLSSWSSFLSSCLP--RDYCGNNIRKP-TYPC 110
Query: 330 KVTG 319
K TG
Sbjct: 111 KRTG 114
Score = 32.7 bits (71), Expect = 8.9
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -1
Query: 611 KNSKIIDFFLGPSLNDKVLKIMPVQK 534
K +I DFFL SL DKVLKI+P+ +
Sbjct: 21 KEFEINDFFLEASLKDKVLKIIPLSR 46
>UniRef50_Q9RSL1 Cluster: 30S ribosomal protein S5; n=2;
Deinococcus|Rep: 30S ribosomal protein S5 - Deinococcus
radiodurans
Length = 196
Score = 50.0 bits (114), Expect = 5e-05
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLL--PVRRGYWGNKIGKPHTVP 334
F A V +GD NG +G+G+ +KEV AI A +A+ +++ PV G T+P
Sbjct: 39 FAALVILGDRNGRVGMGIGKAKEVPVAIEKAKAVARKNMITVPVENG----------TIP 88
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
++ G+ + V L PA GTG+++ RS
Sbjct: 89 HEIVGENSTSRVLLKPAGPGTGVIAGTVPRS 119
>UniRef50_Q9X1J2 Cluster: 30S ribosomal protein S5; n=6;
Bacteria|Rep: 30S ribosomal protein S5 - Thermotoga
maritima
Length = 178
Score = 48.8 bits (111), Expect = 1e-04
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSL--LPVRRGYWGNKIGKPHTV 337
+F+ +G+ NG +GLG+ ++EV AIR AI AK ++ +PV G T+
Sbjct: 36 SFRVVAIVGNKNGKVGLGIGKAREVPEAIRKAISAAKRNIVEVPVING----------TI 85
Query: 336 PCKVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
P +V G+ + V L PA GTGI++ +R+
Sbjct: 86 PHEVIGRQDASKVLLKPAAPGTGIIAGGTVRA 117
>UniRef50_P93014 Cluster: 30S ribosomal protein S5, chloroplast
precursor; n=12; cellular organisms|Rep: 30S ribosomal
protein S5, chloroplast precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 303
Score = 48.8 bits (111), Expect = 1e-04
Identities = 28/88 (31%), Positives = 48/88 (54%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F+A V +GD G++G+G +KEV A++ + I A+ +++ V + K T P +
Sbjct: 169 FRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQV-------PMTKYSTFPHR 221
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSAQFLR 244
G G+ V L PA GTG+++ +R
Sbjct: 222 SEGDYGAAKVMLRPASPGTGVIAGGAVR 249
>UniRef50_A7QPU4 Cluster: Chromosome chr10 scaffold_138, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_138, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 340
Score = 48.0 bits (109), Expect = 2e-04
Identities = 28/88 (31%), Positives = 47/88 (53%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F+A V +GD G +G+GV +KEV A++ + A+ +++ V + K T P +
Sbjct: 206 FRAVVVVGDKQGQVGVGVGKAKEVIAAVQKSATNARRNIITV-------PMTKYLTFPHR 258
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSAQFLR 244
G G+ V L PA GTG+++ +R
Sbjct: 259 ADGDYGAAKVMLRPASPGTGVIAGGAVR 286
>UniRef50_A0E2R7 Cluster: Chromosome undetermined scaffold_75, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_75,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 327
Score = 47.6 bits (108), Expect = 3e-04
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = -3
Query: 657 KXXKLXSIXLFSLPIKEFE--DH*FLPRPVPE**GSKDHACTETNTCRTAHT-FKAFVAI 487
K L +I FS+PIKE++ DH FL E + TC T FKA+V +
Sbjct: 78 KIKSLETIFQFSIPIKEYQIVDH-FLKTLKEE---PLAIGPVQKQTCAGQKTRFKAYVVV 133
Query: 486 GDNNGHIGLGVKCSKEVATAIR 421
GD++ HIGLG K +KEV AI+
Sbjct: 134 GDSHQHIGLGWKSAKEVQGAIQ 155
Score = 35.9 bits (79), Expect = 0.96
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 388 TSSKRLLG*QDRKATHRPLQGHRQVWFCNSPADSCPSWYW 269
+S KR+LG QDR TH P+Q R+ S S YW
Sbjct: 169 SSQKRILGKQDRLTTHSPMQSDRKGRISQSQIGSSTQRYW 208
>UniRef50_Q6F1X7 Cluster: 30S ribosomal protein S5; n=32;
Bacteria|Rep: 30S ribosomal protein S5 - Mesoplasma
florum (Acholeplasma florum)
Length = 206
Score = 46.4 bits (105), Expect = 7e-04
Identities = 30/83 (36%), Positives = 44/83 (53%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F A V +GD G +GLG + EV AI+ A+ AK +L+ V + TVP +
Sbjct: 65 FAAVVVVGDKKGQVGLGTGKANEVPEAIKKAVKEAKKNLIRVPL--------RGTTVPHE 116
Query: 327 VTGKCGSVTVRLIPAPRGTGIVS 259
V G G+ V + PA GTG+++
Sbjct: 117 VIGHFGAGQVLIKPAKPGTGVIA 139
>UniRef50_UPI0001553406 Cluster: PREDICTED: hypothetical protein;
n=2; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 208
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +2
Query: 257 ADTIPVPRGAGISRTVTEPHLPVTLQGTVCGFPILLPQ*PLRTGKRDN 400
A+ +PVP GAG+ T TEP P+TL G +CG LLP P+ + RDN
Sbjct: 41 AEVMPVPMGAGMKSTRTEPQWPITLCG-LCGACCLLP--PVASTHRDN 85
>UniRef50_Q6YR05 Cluster: 30S ribosomal protein S5; n=22;
Bacteria|Rep: 30S ribosomal protein S5 - Onion yellows
phytoplasma
Length = 171
Score = 45.2 bits (102), Expect = 0.002
Identities = 31/83 (37%), Positives = 41/83 (49%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F A V +GD G IG +KE+ AI+ A+ AK L VR G T+P
Sbjct: 37 FSALVVVGDKKGQIGFATAKAKEIVEAIKKALEKAKKQL--VRIPITGT------TIPHD 88
Query: 327 VTGKCGSVTVRLIPAPRGTGIVS 259
G+ G+ L PA +GTGIV+
Sbjct: 89 TIGRFGASKFFLKPASKGTGIVA 111
>UniRef50_Q50301 Cluster: 30S ribosomal protein S5; n=2;
Mycoplasma|Rep: 30S ribosomal protein S5 - Mycoplasma
pneumoniae
Length = 219
Score = 45.2 bits (102), Expect = 0.002
Identities = 32/96 (33%), Positives = 49/96 (51%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F V +G+ G IG G+ + EV AI+ AI A SL + +I K ++ +
Sbjct: 88 FSVLVVVGNRKGKIGYGIAKALEVPNAIKKAIKAAHNSLHTI-------EIHKG-SIYHE 139
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSAQFLRSFFRWLVY 220
V G+ G+ V L PAP+GTGI++ +R+ Y
Sbjct: 140 VIGRSGASRVLLKPAPQGTGIIAGGAIRAIIELAGY 175
>UniRef50_A0T0Y9 Cluster: Chloroplast 30S ribosomal protein S5; n=3;
cellular organisms|Rep: Chloroplast 30S ribosomal
protein S5 - Thalassiosira pseudonana (Marine diatom)
Length = 179
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/90 (28%), Positives = 49/90 (54%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPC 331
+F+A V IGD NG +G+GV +++V A + A + +L+ V I K ++P
Sbjct: 47 SFRAVVVIGDENGKVGVGVGKAEDVVNAFKKAKTDGRKNLIDV-------PITKSLSIPH 99
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
V G G+ + + P+ G+G+++ +R+
Sbjct: 100 AVIGDLGACKIIMRPSIEGSGVIAGGAVRT 129
>UniRef50_Q5NQ48 Cluster: 30S ribosomal protein S5; n=155; cellular
organisms|Rep: 30S ribosomal protein S5 - Zymomonas
mobilis
Length = 233
Score = 44.4 bits (100), Expect = 0.003
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLL--PVRRGYWGNKIGKPHTVP 334
F A V +GD G +G G ++EV AI A AK +++ P+R G + G+
Sbjct: 81 FAALVVVGDGKGRVGFGHGKAREVPEAISKATAAAKKTMIRVPLREGRTLHHDGR----- 135
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVSAQFLRSFFRWL 226
G+ G+ V L AP GTGI++ +R+ F L
Sbjct: 136 ----GRFGAGLVYLRSAPSGTGIIAGGPMRAIFESL 167
>UniRef50_A3BJ14 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 163
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNF 170
VPKK+L+ AG++D +TS+RGST TL NF
Sbjct: 10 VPKKVLKFAGIEDVFTSSRGSTKTLSNF 37
>UniRef50_Q7UN03 Cluster: 30S ribosomal protein S5; n=3;
Bacteria|Rep: 30S ribosomal protein S5 - Rhodopirellula
baltica
Length = 177
Score = 44.0 bits (99), Expect = 0.004
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLL--PVRRGYWGNKIGKPHTV 337
+F A V +G+ +G +G G + EV +++ A A S++ P+ G ++
Sbjct: 42 SFAAMVVVGNGSGQVGWGYGKANEVPPSVQKAQKQASRSMIHVPLVEG----------SI 91
Query: 336 PCKVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
P +V G+ G+ V LIPA GTGI++ Q +R+
Sbjct: 92 PHQVWGRYGAARVVLIPAGAGTGIIAGQAVRA 123
>UniRef50_Q92QF3 Cluster: 30S ribosomal protein S5; n=203; cellular
organisms|Rep: 30S ribosomal protein S5 - Rhizobium
meliloti (Sinorhizobium meliloti)
Length = 189
Score = 43.6 bits (98), Expect = 0.005
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLL--PVRRGYWGNKIGKPHTVP 334
F A V +GD G +G G ++EV AIR A AK L+ P+R G T+
Sbjct: 44 FAALVVVGDQKGRVGFGHGKAREVPEAIRKATEAAKRDLIFVPLRGG---------RTLH 94
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVSAQFLRSFFRWL 226
V G+ G+ V L A GTGI++ +R+ F L
Sbjct: 95 HDVHGRHGAGKVLLRSAKPGTGIIAGGPMRAVFETL 130
>UniRef50_Q82X75 Cluster: 30S ribosomal protein S5; n=11;
Bacteria|Rep: 30S ribosomal protein S5 - Nitrosomonas
europaea
Length = 177
Score = 43.2 bits (97), Expect = 0.006
Identities = 31/113 (27%), Positives = 54/113 (47%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F A +GD G +G+G S+EV A++ A+ A+ ++ V N I T+
Sbjct: 43 FAALTVVGDGKGSVGMGKGKSREVPLAVQKAMDEARQRMVRV------NLIN--GTLHHS 94
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSAQFLRSFFRWLVYRTATPQLVVQLAPWEIL 169
V G+ G+ V + PA GTGI++ +R+ F + + + P+ I+
Sbjct: 95 VIGRHGAARVYMQPASEGTGIIAGGPMRAIFEVMGVHNILAKCLGSTNPYNIV 147
>UniRef50_Q6KI38 Cluster: 30S ribosomal protein S5; n=9;
Firmicutes|Rep: 30S ribosomal protein S5 - Mycoplasma
mobile
Length = 243
Score = 42.3 bits (95), Expect = 0.011
Identities = 30/90 (33%), Positives = 47/90 (52%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPC 331
+F A V +GD G +G G + EV AI+ A+ A+ +L+ V I TVP
Sbjct: 110 SFAAVVVVGDKKGRVGYGHGKALEVPDAIKKAVKDAQNNLIRV-------PIINKSTVPH 162
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
+ K + V L PAP+G GI+++ +R+
Sbjct: 163 EQWAKFLASKVMLKPAPKGKGIIASNSVRA 192
>UniRef50_P59122 Cluster: 30S ribosomal protein S5; n=40;
Bacteria|Rep: 30S ribosomal protein S5 - Bifidobacterium
longum
Length = 233
Score = 42.3 bits (95), Expect = 0.011
Identities = 30/90 (33%), Positives = 44/90 (48%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPC 331
+F A V +GD NG +G+G S+EV AI + AK + V R T+
Sbjct: 66 SFAALVVVGDGNGTVGVGYGKSREVPAAIAKGQLDAKKHMFSVPR--------VRGTITH 117
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
V G + TV L PA GTG+++ +R+
Sbjct: 118 PVQGHDAAGTVLLRPAAPGTGVIAGGSVRA 147
>UniRef50_A6PPX8 Cluster: Ribosomal protein S5; n=4; Bacteria|Rep:
Ribosomal protein S5 - Victivallis vadensis ATCC BAA-548
Length = 181
Score = 41.9 bits (94), Expect = 0.015
Identities = 29/90 (32%), Positives = 44/90 (48%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPC 331
+F A V +GD G +G G + EV+ AIR A+ +L+ V T+P
Sbjct: 36 SFGALVVVGDRKGRVGYGYGKANEVSDAIRKGGEAARRNLVTVPM--------HGQTLPH 87
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
+V K G V L PA GTG+++ +R+
Sbjct: 88 EVEVKFGGARVLLRPASAGTGLIAGGAVRA 117
>UniRef50_P66575 Cluster: 30S ribosomal protein S5; n=128;
Bacteria|Rep: 30S ribosomal protein S5 - Mycobacterium
bovis
Length = 220
Score = 41.5 bits (93), Expect = 0.019
Identities = 31/90 (34%), Positives = 44/90 (48%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPC 331
+F A V +GD NG +G+G +KEV AI + A+ S V IG T P
Sbjct: 63 SFTALVIVGDGNGMVGVGYGKAKEVPAAIAKGVEEARKSFFRV------PLIGGTITHP- 115
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
V G+ + V L PA GTG+++ R+
Sbjct: 116 -VQGEAAAGVVLLRPASPGTGVIAGGAARA 144
>UniRef50_Q6AP53 Cluster: 30S ribosomal protein S5; n=8;
Bacteria|Rep: 30S ribosomal protein S5 - Desulfotalea
psychrophila
Length = 171
Score = 41.5 bits (93), Expect = 0.019
Identities = 28/90 (31%), Positives = 45/90 (50%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPC 331
+F A V +GD NG +G G+ + +V AIR + A+ + V + PH
Sbjct: 37 SFSAIVVVGDGNGKVGYGLGKANQVPEAIRKGVERARKDMALVSL----TDVSIPH---- 88
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
+V G G+ V L PA GTG+++ +R+
Sbjct: 89 QVIGHYGAGRVFLRPASAGTGLIAGGPVRA 118
>UniRef50_UPI0000E20F35 Cluster: PREDICTED: similar to ribosomal
protein S2; n=1; Pan troglodytes|Rep: PREDICTED: similar
to ribosomal protein S2 - Pan troglodytes
Length = 223
Score = 41.1 bits (92), Expect = 0.025
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = -1
Query: 611 KNSKIIDFFLGPSLNDKVLKIMPVQKQTRAGQR 513
K ++ DF LG L DKVLK+M VQKQ +AG+R
Sbjct: 150 KEFEVTDFLLGVPLKDKVLKLMFVQKQPKAGRR 182
>UniRef50_Q7MTN0 Cluster: 30S ribosomal protein S5; n=32;
Bacteria|Rep: 30S ribosomal protein S5 - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 172
Score = 41.1 bits (92), Expect = 0.025
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLL--PVRRGYWGNKIGKPHTV 337
TF A V +G+ +G IG G+ + EV AI + AK +L+ PV G T+
Sbjct: 37 TFAAIVVVGNEDGVIGWGLGKAGEVPAAIAKGVEAAKKNLIRVPVHNG----------TI 86
Query: 336 PCKVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
P + G +V L PA GTG+ + +R+
Sbjct: 87 PHEQAASYGGASVFLKPATTGTGVKAGGAMRA 118
>UniRef50_P73304 Cluster: 30S ribosomal protein S5; n=30; cellular
organisms|Rep: 30S ribosomal protein S5 - Synechocystis
sp. (strain PCC 6803)
Length = 173
Score = 40.3 bits (90), Expect = 0.044
Identities = 24/90 (26%), Positives = 45/90 (50%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPC 331
+F+A V +G+ G +G+GV + +V A+R + K L+ V + K +++
Sbjct: 38 SFRAIVVVGNETGQVGVGVGKAGDVIGAVRKGVADGKKQLIEV-------PLTKSNSITH 90
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
G G V + PA GTG+++ +R+
Sbjct: 91 ITNGVSGGAKVVVRPAAPGTGVIAGGAVRT 120
>UniRef50_A7CZB7 Cluster: Ribosomal protein S5; n=1; Opitutaceae
bacterium TAV2|Rep: Ribosomal protein S5 - Opitutaceae
bacterium TAV2
Length = 231
Score = 39.9 bits (89), Expect = 0.059
Identities = 27/90 (30%), Positives = 43/90 (47%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPC 331
+F A +GD NG +G+G + EV AI+ A+ ++ V K T+P
Sbjct: 92 SFSALAVVGDKNGKVGIGYGKANEVPDAIKKGTENARKRMVSVTL--------KGDTIPH 143
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
+V G V L PA GTG+++ +R+
Sbjct: 144 EVFGTHDGGKVLLRPAVTGTGLIAGGAVRA 173
>UniRef50_Q4FLN5 Cluster: 30S ribosomal protein S5; n=4;
Rickettsiales|Rep: 30S ribosomal protein S5 -
Pelagibacter ubique
Length = 170
Score = 39.1 bits (87), Expect = 0.10
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLL--PVRRGYWGNKIGKPHTVP 334
F A V +G+ G IG+ +K+V AI+ A A+ L+ P+R G T+
Sbjct: 33 FSALVVVGNQAGKIGVAHAKAKQVPDAIKKANETARRVLIHVPLREG---------RTIH 83
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVSAQFLRS 241
V GK G+ + L AP+GTGI++ +R+
Sbjct: 84 HDVYGKDGAGKIILRSAPKGTGIIAGGPVRA 114
>UniRef50_A4S3U8 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 148
Score = 38.3 bits (85), Expect = 0.18
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F A V +G+ +G IG +V AI A A SL V+R + HT+ +
Sbjct: 22 FTAMVVVGNGDGVIGFATGKGADVGMAIDKAYRKAARSLTYVQRF-------EDHTIYHE 74
Query: 327 VTGK-CGSVTVRLIPAPRGTGIVS 259
V GK C ++ V ++PAP G GIV+
Sbjct: 75 VRGKYCKTICV-MLPAPSGDGIVA 97
>UniRef50_Q5L704 Cluster: 30S ribosomal protein S5; n=7;
Chlamydiaceae|Rep: 30S ribosomal protein S5 -
Chlamydophila abortus
Length = 165
Score = 37.5 bits (83), Expect = 0.31
Identities = 28/89 (31%), Positives = 42/89 (47%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPC 331
+F A + +GD G +G G + E+ AIR A+ +L+ + G+ I PH V
Sbjct: 34 SFSALILVGDGKGRLGYGFAKANELTDAIRKGGEAARKNLITI-ESLEGDSI--PHEVLV 90
Query: 330 KVTGKCGSVTVRLIPAPRGTGIVSAQFLR 244
G + L PA GTGIV+ +R
Sbjct: 91 DQDG----AQLLLKPAKPGTGIVAGSRIR 115
>UniRef50_UPI000023F324 Cluster: hypothetical protein FG00649.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG00649.1 - Gibberella zeae PH-1
Length = 504
Score = 37.1 bits (82), Expect = 0.41
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -3
Query: 495 VAI-GDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTG 319
VAI G+ NG +GLG+ S E A A +LA ++ PVRR + N+ T+ VT
Sbjct: 365 VAIAGNGNGRLGLGMAKSTEPGVAEETAQMLAIRNMKPVRR--YENR-----TIYGNVTS 417
Query: 318 KCGSVTVRLIPAPRGTGI 265
K V L+ P G G+
Sbjct: 418 KISGTVVELMARPPGFGL 435
>UniRef50_UPI0000DA3DCA Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 40S ribosomal protein S2 - Rattus norvegicus
Length = 68
Score = 36.7 bits (81), Expect = 0.55
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTK 89
V KK L +A +QDCY AR + LGN+ YLT DLW + TK
Sbjct: 14 VLKKKLLLASIQDCYMIARVHSLMLGNYAKATFYVFSMTSNYLTFDLWTENVCTK 68
>UniRef50_Q2GEC2 Cluster: 30S ribosomal protein S5; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S5 - Neorickettsia sennetsu (strain Miyayama)
Length = 172
Score = 36.3 bits (80), Expect = 0.72
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLL--PVRRGYWGNKIGKPHTV 337
+F+ +GD G +G EV A A+ AK +++ P+R G T+
Sbjct: 32 SFRVAALVGDKKGCVGYATAKHDEVLDARSKAVRKAKGAMIRFPLREG---------RTI 82
Query: 336 PCKVTGKCGSVTVRLIPAPRGTGIVSAQFLRSFFRWL 226
K G+ + + PAP GTGIV+ +R F L
Sbjct: 83 HHDCFSKLGASKLFIKPAPEGTGIVAGGAMRKFCEML 119
>UniRef50_Q4EF76 Cluster: Putative uncharacterized protein; n=1;
Listeria monocytogenes str. 4b H7858|Rep: Putative
uncharacterized protein - Listeria monocytogenes str. 4b
H7858
Length = 77
Score = 35.5 bits (78), Expect = 1.3
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 412 NSASNGSGDFLAALXTQTNMTVVVANGNKCLES 510
NS ++ +FL T+TNMT+ V+N NKC E+
Sbjct: 25 NSFTDSIWNFLRFTSTETNMTIFVSNNNKCCET 57
>UniRef50_UPI0000D9EF8A Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Macaca mulatta|Rep: PREDICTED: similar
to 40S ribosomal protein S2 - Macaca mulatta
Length = 181
Score = 35.1 bits (77), Expect = 1.7
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 127 LTPDLWRDIPLTKSPYSEF 71
LTPDLW++ TKSPY EF
Sbjct: 139 LTPDLWKETVFTKSPYQEF 157
>UniRef50_A7S8R4 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 304
Score = 35.1 bits (77), Expect = 1.7
Identities = 27/75 (36%), Positives = 34/75 (45%)
Frame = -3
Query: 333 CKVTGKCGSVTVRLIPAPRGTGIVSAQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHM 154
CK GKC + VR RGTG V Q + LV + P + V + L P +
Sbjct: 215 CKNGGKCVDMLVRAECDCRGTGYV-GQHCQLKKEILVNDSKEPNVTVGVTAHVRGLAPGL 273
Query: 153 LPLPRHMPTSLLTCG 109
PLP + LLTCG
Sbjct: 274 QPLPLTVIMVLLTCG 288
>UniRef50_UPI000056598D Cluster: UPI000056598D related cluster; n=1;
Mus musculus|Rep: UPI000056598D UniRef100 entry - Mus
musculus
Length = 239
Score = 34.7 bits (76), Expect = 2.2
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = -3
Query: 474 GHIGLGVKCSKEVATAIRGAIILAKL-SLLPVRRGYWGNKIGK--PHTVPCKVTGKCGSV 304
GH GL CS EVATAI+ I + L S P+ R GN GK P P ++ S+
Sbjct: 98 GHSGLSSMCSGEVATAIQVLGITSYLGSPWPLCRE--GNMTGKSLPSVCPMQIRDYHSSM 155
Query: 303 TVRLIPAPRGTGIVSAQFLRSFFRWLVYRTAT 208
LI AP T I+S ++ L+ +T
Sbjct: 156 LACLITAP-STCIISGLVPKNLLLLLLLLAST 186
>UniRef50_A4JFF4 Cluster: Putative uncharacterized protein; n=1;
Burkholderia vietnamiensis G4|Rep: Putative
uncharacterized protein - Burkholderia vietnamiensis
(strain G4 / LMG 22486) (Burkholderiacepacia (strain
R1808))
Length = 248
Score = 33.9 bits (74), Expect = 3.9
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -1
Query: 554 KIMPVQKQTRAGQRTLSRHLLPLATTTVILV---WVXSAARKSPLPFEALLSLLSCLFYQ 384
++ V++QTR+ R L LA + V W+ SA+ + A+++LL CLF+
Sbjct: 132 RVGSVERQTRSAMTAPRRTCLLLAVGVFLCVQVMWLFSASGE----MRAIMTLLGCLFFL 187
Query: 383 FEEVTGVTRS-ESHTP 339
F ++ RS E P
Sbjct: 188 FSSISRAPRSMEDENP 203
>UniRef50_A2RAI1 Cluster: Remark: literature about the mitochondrial
ribosome structure: Pubmed 11279123. precursor; n=9;
Eurotiomycetidae|Rep: Remark: literature about the
mitochondrial ribosome structure: Pubmed 11279123.
precursor - Aspergillus niger
Length = 444
Score = 33.9 bits (74), Expect = 3.9
Identities = 24/74 (32%), Positives = 39/74 (52%)
Frame = -3
Query: 486 GDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKCGS 307
G+ NG +G+G+ S E+ A + A A ++ PV R Y + T+ V GK G+
Sbjct: 284 GNQNGLMGIGIAKSDEIIDACQQARARAVKNMQPVPR-Y------EKRTIFGDVEGKVGA 336
Query: 306 VTVRLIPAPRGTGI 265
V ++L+ P G G+
Sbjct: 337 VQLKLMHRPPGFGL 350
>UniRef50_UPI0000D9ACAD Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Macaca mulatta|Rep: PREDICTED: similar
to 40S ribosomal protein S2 - Macaca mulatta
Length = 170
Score = 33.5 bits (73), Expect = 5.1
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -1
Query: 611 KNSKIIDFFLGPSLNDKVLKIMPVQKQTRAGQ 516
K ++ DF L L DKVLK+M V+KQ AG+
Sbjct: 16 KEFEVTDFLLEVPLKDKVLKLMFVKKQPEAGR 47
>UniRef50_A0Z6X2 Cluster: Sensor protein; n=1; marine gamma
proteobacterium HTCC2080|Rep: Sensor protein - marine
gamma proteobacterium HTCC2080
Length = 276
Score = 33.5 bits (73), Expect = 5.1
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 528 TCRTAH-TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSL 391
T + AH F+ F+ ++ H GLG+ +A ++ GA+ LA+ L
Sbjct: 216 TPKIAHQAFQPFITTAEDGSHAGLGLTVCASIAASMGGAVTLARTEL 262
>UniRef50_Q4RI35 Cluster: Chromosome 8 SCAF15044, whole genome shotgun
sequence; n=2; Tetraodontidae|Rep: Chromosome 8
SCAF15044, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 1308
Score = 33.1 bits (72), Expect = 6.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 547 CLYRNKHVPDSAHFQGICCHWRQQRSYWFGCXVQQGSRHCHSRRYYP 407
C+ R+ V S G+C H+ Q+ W GC CH+ + +P
Sbjct: 1168 CVIRHHRVRKSLTKPGVCVHFSQRGQLWAGCTDSGQLILCHTDQRHP 1214
>UniRef50_Q9RS86 Cluster: Ribosomal protein S2-related protein; n=5;
Bacteria|Rep: Ribosomal protein S2-related protein -
Deinococcus radiodurans
Length = 472
Score = 33.1 bits (72), Expect = 6.7
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -3
Query: 504 KAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIG 352
++ V IG + H G + +++VA A+RG + L V GYW + G
Sbjct: 2 RSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQQEPG 52
>UniRef50_Q9LVC2 Cluster: Genomic DNA, chromosome 5, P1 clone:MKN22;
n=1; Arabidopsis thaliana|Rep: Genomic DNA, chromosome
5, P1 clone:MKN22 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 144
Score = 33.1 bits (72), Expect = 6.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 277 WYWNCVCAVPKKLLQMAGVQDCYTSARGSTGTLGNF 170
W+WN +C P ++L G +D GS+ + NF
Sbjct: 54 WFWNYICVPPPEILYFDGRRDDDDDGYGSSSSSSNF 89
>UniRef50_A4R1A2 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 414
Score = 33.1 bits (72), Expect = 6.7
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = -3
Query: 489 IGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKCG 310
+G+ NG IGLG S + A+ A ++A +++P+RR Y + T+ KV K
Sbjct: 278 VGNGNGRIGLGEAKSVDGQIAMHKARLMAIKNMVPIRR-Y------EDRTIYGKVKVKIA 330
Query: 309 SVTVRLIPAPRGTGI 265
V + P G G+
Sbjct: 331 GTVVEMAARPPGFGL 345
>UniRef50_P41846 Cluster: WBSCR14 protein homolog; n=2;
Caenorhabditis elegans|Rep: WBSCR14 protein homolog -
Caenorhabditis elegans
Length = 1009
Score = 33.1 bits (72), Expect = 6.7
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 209 VAVLYTSHLKKLLRNCADTIPVPRGAGISRTVTEPHLPVTLQGT 340
V++ + SH++++L N +P P + + T +P+LP LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,492,451
Number of Sequences: 1657284
Number of extensions: 14952987
Number of successful extensions: 37859
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 36284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37800
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -