Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0748.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   161   7e-41
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.64 
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    28   1.5  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   6.0  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  161 bits (392), Expect = 7e-41
 Identities = 80/144 (55%), Positives = 102/144 (70%), Gaps = 2/144 (1%)
 Frame = -3

Query: 657 KXXKLXSIXLFSLPIKEFE--DH*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFVAIG 484
           K   +  I L+SLPIKE++  D+ FLPR   E    K     +         FKAFV IG
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDY-FLPRLNDE--VMKVVPVQKQTRAGQRTRFKAFVVIG 104

Query: 483 DNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKCGSV 304
           D++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G PHTVP KV+GKCGSV
Sbjct: 105 DSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSV 164

Query: 303 TVRLIPAPRGTGIVSAQFLRSFFR 232
           TVRL+PAPRG G+V+A   + F +
Sbjct: 165 TVRLVPAPRGAGLVAAPVTKRFLQ 188



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 27/61 (44%), Positives = 37/61 (60%)
 Frame = -2

Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
           V K+ LQ+AG++DCYT +RGST TLGNF              LTP+LW + P  ++P  E
Sbjct: 182 VTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEE 241

Query: 73  F 71
           +
Sbjct: 242 Y 242


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 246 RSFFRWLVYRTATPQLVVQL 187
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -1

Query: 626 FLYQSKNSKIIDFFLGPSLNDKVLKIMPVQKQTRAGQRTLS 504
           +L   +  +++D   GP + DK+LKI+P +++T     T++
Sbjct: 192 YLIMDEADRLLDMDFGPII-DKILKIIPHERRTLLFSATMT 231


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 352 KATHRPLQGHRQVWFCNSPADSCPSWYWN 266
           +A    L G  +   C   + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,155
Number of Sequences: 5004
Number of extensions: 59827
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)