Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0748.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 175 4e-44
07_01_0756 + 5819367-5820038,5820847-5821005 174 5e-44
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 70 2e-12
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 40 0.003
11_01_0395 + 2999855-2999920,3000605-3002191 32 0.50
01_01_1097 + 8682250-8682337,8682406-8682474,8683014-8683222,868... 31 1.2
11_06_0640 + 25744048-25745021,25745128-25745273,25747870-257479... 29 2.7
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 3.5
06_03_1109 - 27672176-27672223,27672371-27672452,27674169-27674395 28 8.2
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 175 bits (425), Expect = 4e-44
Identities = 89/145 (61%), Positives = 106/145 (73%), Gaps = 5/145 (3%)
Frame = -3
Query: 672 LFAKEKXXKLXSIXLFSLPIKEFEDH*FLPRPVPE**GSKDHACTETNTCRTAHT----- 508
L + + K+ I L SLP+KE H + VP G KD T +
Sbjct: 53 LVKEGRFSKIEEIYLHSLPVKE---HQIVETLVP---GLKDEVMKITPVQKQTRAGQRTR 106
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
FKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCK
Sbjct: 107 FKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCK 166
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSAQ 253
VTGKCGSVTVR++PAPRG+GIV+A+
Sbjct: 167 VTGKCGSVTVRMVPAPRGSGIVAAR 191
Score = 70.1 bits (164), Expect = 2e-12
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKK+LQ AG++D +TS+RGST TLGNF +LTPD WRD KSP+ E
Sbjct: 192 VPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRDTKFVKSPFQE 251
Query: 73 F 71
+
Sbjct: 252 Y 252
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 174 bits (424), Expect = 5e-44
Identities = 89/144 (61%), Positives = 105/144 (72%), Gaps = 5/144 (3%)
Frame = -3
Query: 672 LFAKEKXXKLXSIXLFSLPIKEFEDH*FLPRPVPE**GSKDHACTETNTCRTAHT----- 508
L + K K+ I L SLP+KE H + + VP G KD T +
Sbjct: 56 LVKENKIHKIEEIYLHSLPVKE---HQIVEQLVP---GLKDEVMKITPVQKQTRAGQRTR 109
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
FKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCK
Sbjct: 110 FKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 169
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSA 256
VTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 170 VTGKCGSVTVRMVPAPRGSGIVAA 193
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKK+LQ AG++D +TS+RGST TLGNF +LTPD WR+ K+P+ E
Sbjct: 195 VPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRETRFIKTPFQE 254
Query: 73 F 71
+
Sbjct: 255 Y 255
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 70.1 bits (164), Expect = 2e-12
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = -3
Query: 498 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIG-KPHTVPCKVT 322
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 321 GKCGSVTVRLIPAPRGTGIVSAQ 253
K GSVTVR++ P G+ +V+ +
Sbjct: 57 DKYGSVTVRMMLPPMGSSVVATR 79
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNF 170
VPKK+L+ AG++D +TS+RGST TL NF
Sbjct: 80 VPKKVLKFAGIEDVFTSSRGSTKTLSNF 107
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = -3
Query: 510 TFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPV 382
+F+A V +GD GH+G+GV +KEV AI A + + +L+ V
Sbjct: 191 SFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNLVTV 233
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 611 KNSKIIDFFLGPSLNDKVLKIMPVQKQTRAGQRTLSRH 498
+ K+IDF L L D + I+P+ R G++TL +H
Sbjct: 243 EKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKTLVQH 280
>01_01_1097 +
8682250-8682337,8682406-8682474,8683014-8683222,
8683468-8683657,8684619-8685010,8685610-8686098
Length = 478
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/84 (25%), Positives = 34/84 (40%)
Frame = -1
Query: 578 PSLNDKVLKIMPVQKQTRAGQRTLSRHLLPLATTTVILVWVXSAARKSPLPFEALLSLLS 399
PS+ + + + + QT Q T +RH LP + +L + P + L+
Sbjct: 363 PSIREVAVALSYLASQTHESQNTAARHTLPGPSVPRVLDNQINQDTSLPSQHGVHMPPLA 422
Query: 398 CLFYQFEEVTGVTRSESHTPSLAR 327
+ +EV RS SH P R
Sbjct: 423 GTDHMVQEVKENCRSSSHRPGRGR 446
>11_06_0640 +
25744048-25745021,25745128-25745273,25747870-25747945,
25747996-25748230
Length = 476
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -1
Query: 539 QKQTRAGQRTLSRHLLPLATTTVILVWVXSAARKSPLPFEALLSLLSCLFYQFEEVTGVT 360
++ R + TL L LA IL+W+ + +PL L LLS F+ V VT
Sbjct: 54 ERDRRDREATLIMLTLLLALAMPILLWLSAGEAPAPLLVWRLSLLLSTYFFLCANVLFVT 113
Query: 359 RS 354
+S
Sbjct: 114 KS 115
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 334 RDGVWLSDLVTPVTSSNW*KRQLSKDNSASNGSGDFLAALXTQTNMTVVVANG 492
R VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>06_03_1109 - 27672176-27672223,27672371-27672452,27674169-27674395
Length = 118
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 514 RCPARVCFCTGMIFRTLSFRDGPRKKSMIFEFF 612
RC ++ C G++ L D P KK F FF
Sbjct: 76 RCNVQIFRCKGIVVYKLRIMDNPGKKQKRFLFF 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,327,246
Number of Sequences: 37544
Number of extensions: 442605
Number of successful extensions: 1117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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