Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0748.Seq
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 180 8e-46
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11) 32 0.39
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_38056| Best HMM Match : OAD_gamma (HMM E-Value=8) 30 1.6
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 30 2.1
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9) 29 3.6
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 4.8
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 180 bits (439), Expect = 8e-46
Identities = 93/134 (69%), Positives = 99/134 (73%)
Frame = -3
Query: 657 KXXKLXSIXLFSLPIKEFEDH*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFVAIGDN 478
K L I LFSLPIKEFE F + K + FKAFVAIGD+
Sbjct: 22 KIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDS 81
Query: 477 NGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 298
NGH+GLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCKVTGKCGS V
Sbjct: 82 NGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSTRV 141
Query: 297 RLIPAPRGTGIVSA 256
RLIPAPRGTGIVSA
Sbjct: 142 RLIPAPRGTGIVSA 155
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/61 (57%), Positives = 41/61 (67%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKKLLQMAG++DCYTS RG T TLGNF YLTPD+W++ TK+PY E
Sbjct: 157 VPKKLLQMAGIEDCYTSTRGQTATLGNFAKATFAAISETYAYLTPDMWKETVFTKTPYQE 216
Query: 73 F 71
F
Sbjct: 217 F 217
>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
Length = 733
Score = 32.3 bits (70), Expect = 0.39
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -3
Query: 489 IGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLP-VRRGYWGNKIGKPHTVPCKVTGKC 313
IGD+ G + V+ +K + G++ L+ P +RRG G++ KPH+ P ++ +
Sbjct: 137 IGDSGGIDTMDVR-NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEPRFMSARF 195
Query: 312 GS 307
GS
Sbjct: 196 GS 197
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 291 IPAPRGTGIVSAQFLRSFFRWLVYRTATPQLVVQLA 184
+P+P I A+ +R F +Y T+T QLVV LA
Sbjct: 1072 LPSPWYAAIYQARVMRQFCYQKIYDTSTGQLVVSLA 1107
>SB_38056| Best HMM Match : OAD_gamma (HMM E-Value=8)
Length = 176
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -3
Query: 294 LIPAPRGTGIVSAQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLL 118
++P PR G + + F + R TP VV A E +L + P+ +H+ S +
Sbjct: 101 IVPDPRDDGKAVERVFQKVFYYPARRYPTPDAVVPRATMESILPALLGPIVKHLAKSAI 159
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 29.9 bits (64), Expect = 2.1
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 6/114 (5%)
Frame = -2
Query: 493 CHWRQQRSYWFGCXVQQGSRHCHSRRYYPC*VVSFTSSKRLLG*QD------RKATHRPL 332
C R + F C GS+ CH Y + G D RK H
Sbjct: 1111 CTPRNDSTGHFSCNETTGSKDCHDGWYGGTCSIYCLPHNGSSGHYDCDASSGRKTCHVDW 1170
Query: 331 QGHRQVWFCNSPADSCPSWYWNCVCAVPKKLLQMAGVQDCYTSARGSTGTLGNF 170
G FC+ P DS +Y N V K + ++C T + S G+ G++
Sbjct: 1171 YGINCTVFCSKPRDSKDHYYCN-VTNGEKVCTEDLYGRNCTTYCKSSNGSDGHY 1223
>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
Length = 766
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +1
Query: 178 PRCQLNHELRCS---SPVHQPSEEAS*ELRRHNSSTTRGRNQPDCYRTTLAGDLARDGVW 348
P C + + R S +H SE+ E+ HN+ T + Y T L R+GV
Sbjct: 699 PACLVREDQRRSIITQQLHAWSEKIREEVLLHNTCTPGQKRSEKQYYYTTPARLVREGVL 758
Query: 349 LSDLVTP 369
L + TP
Sbjct: 759 LHNTCTP 765
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = -3
Query: 390 LPVRRGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 271
LP GYW N G P PC V C + + P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 281 LVVLELCLRSS*EASSDGWCTGLLHLSSWFNWHLGKFC 168
L E CLR + S GW TGL + ++W + G +C
Sbjct: 598 LTAAEECLRCP-QTKSCGWGTGLNNNNTWQDCRPGHYC 634
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,310,707
Number of Sequences: 59808
Number of extensions: 503333
Number of successful extensions: 1223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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