Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0748.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   168   4e-42
U10401-4|AAN65289.1|  937|Caenorhabditis elegans Myc and mondo-l...    33   0.20 
U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-l...    33   0.20 
AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interacto...    33   0.20 
AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic helix-l...    33   0.20 
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm rece...    28   7.4  
AF098999-3|AAC68726.2|  445|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  168 bits (408), Expect = 4e-42
 Identities = 89/139 (64%), Positives = 100/139 (71%)
 Frame = -3

Query: 672 LFAKEKXXKLXSIXLFSLPIKEFEDH*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFV 493
           L  ++K   L  I L SLPIKEFE    L   + +    K     +  T      FKAFV
Sbjct: 66  LVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLKDE-VLKISPVQKQTTAGQRTRFKAFV 124

Query: 492 AIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKC 313
           AIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+++PVRRGYWGNKIG PHTVPCKVTGKC
Sbjct: 125 AIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKC 184

Query: 312 GSVTVRLIPAPRGTGIVSA 256
            SV VRLIPAPRGTGIVSA
Sbjct: 185 ASVMVRLIPAPRGTGIVSA 203



 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 34/58 (58%), Positives = 40/58 (68%)
 Frame = -2

Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPY 80
           VPKKLL MAG++DCYT+A+GST TLGNF             YLTPDLW++  L KSPY
Sbjct: 205 VPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPY 262


>U10401-4|AAN65289.1|  937|Caenorhabditis elegans Myc and mondo-like
           protein 1, isoformb protein.
          Length = 937

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 209 VAVLYTSHLKKLLRNCADTIPVPRGAGISRTVTEPHLPVTLQGT 340
           V++ + SH++++L N    +P P  + +  T  +P+LP  LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518


>U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-like
           protein 1, isoforma protein.
          Length = 1009

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 209 VAVLYTSHLKKLLRNCADTIPVPRGAGISRTVTEPHLPVTLQGT 340
           V++ + SH++++L N    +P P  + +  T  +P+LP  LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518


>AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interactor
           protein.
          Length = 1009

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 209 VAVLYTSHLKKLLRNCADTIPVPRGAGISRTVTEPHLPVTLQGT 340
           V++ + SH++++L N    +P P  + +  T  +P+LP  LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518


>AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic
           helix-loop-helix leucinezipper WBSCR14-like protein
           protein.
          Length = 913

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 209 VAVLYTSHLKKLLRNCADTIPVPRGAGISRTVTEPHLPVTLQGT 340
           V++ + SH++++L N    +P P  + +  T  +P+LP  LQ T
Sbjct: 379 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 422


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
 Frame = -3

Query: 537  ETNTCRTAHTFKAFVAIGD---NNGHI----GLG--VKCSKEVATAI 424
            E N+ RTA++FK  +AIG    N GH     GL   VKC+K + T I
Sbjct: 5627 EMNSLRTAYSFKNKLAIGSCKANIGHAYAASGLAALVKCAKMLQTGI 5673


>AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 30 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 246 RSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLLTC 112
           R FF+ L+Y+  +P     + P  ++L      L  ++PT L+ C
Sbjct: 241 RQFFKSLIYQITSPTFTFYI-PAILILTVPFFDLKFNLPTGLIVC 284


>AF098999-3|AAC68726.2|  445|Caenorhabditis elegans Hypothetical
           protein W04C9.3 protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 206 GVAVLYTSHLKKLLRNCADTIPVPRGAGISR 298
           G+   + SH+ K  ++C   IPVP G  +S+
Sbjct: 414 GMVCFFGSHMLKKTQDCEMPIPVPEGYYLSK 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,038,170
Number of Sequences: 27780
Number of extensions: 355487
Number of successful extensions: 1046
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)