Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0748.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   0.91 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.91 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.91 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.91 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.1  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   2.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   2.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   2.8  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   6.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.5  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 658 KXGQTREHXLVFFT 617
           K GQTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 658 KXGQTREHXLVFFT 617
           K GQTREH L+ FT
Sbjct: 56  KNGQTREHALLAFT 69


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 658 KXGQTREHXLVFFT 617
           K GQTREH L+ FT
Sbjct: 72  KNGQTREHALLAFT 85


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 658 KXGQTREHXLVFFT 617
           K GQTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 476 TVILVWVXSAARKSPL 429
           T++LVW  SAA  SP+
Sbjct: 306 TILLVWAISAAIGSPI 321


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 227 WCTGLLHLSSWFNWHLGKFC*SHICCHCQDIC 132
           WC G  + SS  N  LG+F  +  CC   D+C
Sbjct: 36  WC-GHGNKSSGPN-ELGRFKHTDACCRTHDMC 65


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 227 WCTGLLHLSSWFNWHLGKFC*SHICCHCQDIC 132
           WC G  + SS  N  LG+F  +  CC   D+C
Sbjct: 41  WC-GHGNKSSGPN-ELGRFKHTDACCRTHDMC 70


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 227 WCTGLLHLSSWFNWHLGKFC*SHICCHCQDIC 132
           WC G  + SS  N  LG+F  +  CC   D+C
Sbjct: 41  WC-GHGNKSSGPN-ELGRFKHTDACCRTHDMC 70


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 333 CKVTGKCGSVTVRLIPAPRGT 271
           C + G CG +   +   P+GT
Sbjct: 75  CPICGACGDIAHTVKYCPKGT 95


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 147 LPRHMPTSL 121
           LP+H+PTSL
Sbjct: 379 LPKHLPTSL 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,045
Number of Sequences: 438
Number of extensions: 4343
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)