Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0748.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 180 6e-46
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 180 6e-46
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 180 6e-46
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 180 6e-46
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 177 8e-45
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 175 3e-44
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 49 3e-06
At5g56520.1 68418.m07054 expressed protein 31 0.97
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.2
At2g22950.1 68415.m02725 calcium-transporting ATPase, plasma mem... 28 5.2
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.8
At1g35710.1 68414.m04439 leucine-rich repeat transmembrane prote... 28 6.8
At4g37640.1 68417.m05324 calcium-transporting ATPase 2, plasma m... 27 9.0
At2g07719.1 68415.m00969 expressed protein 27 9.0
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 180 bits (439), Expect = 6e-46
Identities = 89/140 (63%), Positives = 103/140 (73%)
Frame = -3
Query: 672 LFAKEKXXKLXSIXLFSLPIKEFEDH*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFV 493
L A K KL I L SLP+KE++ L P + K + FKAFV
Sbjct: 62 LVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFV 121
Query: 492 AIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKC 313
+GD NGH+GLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCKVTGKC
Sbjct: 122 VVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKC 181
Query: 312 GSVTVRLIPAPRGTGIVSAQ 253
GSVTVR++PAPRG+GIV+A+
Sbjct: 182 GSVTVRMVPAPRGSGIVAAR 201
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SPY E
Sbjct: 202 VPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 180 bits (439), Expect = 6e-46
Identities = 89/140 (63%), Positives = 103/140 (73%)
Frame = -3
Query: 672 LFAKEKXXKLXSIXLFSLPIKEFEDH*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFV 493
L A K KL I L SLP+KE++ L P + K + FKAFV
Sbjct: 62 LVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFV 121
Query: 492 AIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKC 313
+GD NGH+GLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCKVTGKC
Sbjct: 122 VVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKC 181
Query: 312 GSVTVRLIPAPRGTGIVSAQ 253
GSVTVR++PAPRG+GIV+A+
Sbjct: 182 GSVTVRMVPAPRGSGIVAAR 201
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SPY E
Sbjct: 202 VPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 180 bits (439), Expect = 6e-46
Identities = 89/140 (63%), Positives = 103/140 (73%)
Frame = -3
Query: 672 LFAKEKXXKLXSIXLFSLPIKEFEDH*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFV 493
L A K KL I L SLP+KE++ L P + K + FKAFV
Sbjct: 62 LVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFV 121
Query: 492 AIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKC 313
+GD NGH+GLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCKVTGKC
Sbjct: 122 VVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKC 181
Query: 312 GSVTVRLIPAPRGTGIVSAQ 253
GSVTVR++PAPRG+GIV+A+
Sbjct: 182 GSVTVRMVPAPRGSGIVAAR 201
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SPY E
Sbjct: 202 VPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 180 bits (439), Expect = 6e-46
Identities = 89/140 (63%), Positives = 103/140 (73%)
Frame = -3
Query: 672 LFAKEKXXKLXSIXLFSLPIKEFEDH*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFV 493
L A K KL I L SLP+KE++ L P + K + FKAFV
Sbjct: 62 LVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFV 121
Query: 492 AIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKC 313
+GD NGH+GLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCKVTGKC
Sbjct: 122 VVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKC 181
Query: 312 GSVTVRLIPAPRGTGIVSAQ 253
GSVTVR++PAPRG+GIV+A+
Sbjct: 182 GSVTVRMVPAPRGSGIVAAR 201
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SPY E
Sbjct: 202 VPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 177 bits (430), Expect = 8e-45
Identities = 85/140 (60%), Positives = 104/140 (74%)
Frame = -3
Query: 672 LFAKEKXXKLXSIXLFSLPIKEFEDH*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFV 493
L + K K+ I L SLP+KE++ L P + K + FKAF+
Sbjct: 54 LVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFI 113
Query: 492 AIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKC 313
+GD+NGH+GLGVKCSKEVATAIRGAIILAKLS++P+RRGYWGNKIGKPHTVPCKVTGKC
Sbjct: 114 VVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKC 173
Query: 312 GSVTVRLIPAPRGTGIVSAQ 253
GSVTVR++PAPRG+GIV+A+
Sbjct: 174 GSVTVRMVPAPRGSGIVAAR 193
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/60 (48%), Positives = 38/60 (63%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++ +KSPY E
Sbjct: 194 VPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSKSPYQE 253
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 175 bits (425), Expect = 3e-44
Identities = 86/140 (61%), Positives = 102/140 (72%)
Frame = -3
Query: 672 LFAKEKXXKLXSIXLFSLPIKEFEDH*FLPRPVPE**GSKDHACTETNTCRTAHTFKAFV 493
L A ++ I L SLP+KE++ L P + K + FKAFV
Sbjct: 63 LVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFV 122
Query: 492 AIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCKVTGKC 313
+GD NGH+GLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCKVTGKC
Sbjct: 123 VVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKC 182
Query: 312 GSVTVRLIPAPRGTGIVSAQ 253
GSVTVR++PAPRG+GIV+A+
Sbjct: 183 GSVTVRMVPAPRGSGIVAAR 202
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = -2
Query: 253 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 74
VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SPY E
Sbjct: 203 VPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 262
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/88 (31%), Positives = 48/88 (54%)
Frame = -3
Query: 507 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSLLPVRRGYWGNKIGKPHTVPCK 328
F+A V +GD G++G+G +KEV A++ + I A+ +++ V + K T P +
Sbjct: 169 FRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQV-------PMTKYSTFPHR 221
Query: 327 VTGKCGSVTVRLIPAPRGTGIVSAQFLR 244
G G+ V L PA GTG+++ +R
Sbjct: 222 SEGDYGAAKVMLRPASPGTGVIAGGAVR 249
>At5g56520.1 68418.m07054 expressed protein
Length = 101
Score = 30.7 bits (66), Expect = 0.97
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 277 WYWNCVCAVPKKLLQMAGVQDCYTSARGSTGTLGN 173
W+WN +C P ++L G +D GS+ + N
Sbjct: 54 WFWNYICVPPPEILYFDGRRDDDDDGYGSSSSSSN 88
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 501 AFVAIGDNNGHIGLGVKCSKE 439
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At2g22950.1 68415.m02725 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA7)
identical to SP|O64806 Potential calcium-transporting
ATPase 7, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 7) {Arabidopsis thaliana}; strong
similarity to SP|O81108 Calcium-transporting ATPase 2,
plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
2) {Arabidopsis thaliana}
Length = 1015
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 569 NDKVLKIMPVQKQTRAGQRTLSRHLLPLATTTVILVWVXSAARKS 435
N++++K MPV ++ + R++L A I++W+ A KS
Sbjct: 867 NNELMKRMPVGRRGNFITNAMWRNILGQAVYQFIIIWILQAKGKS 911
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3
Query: 345 HTVPCKVTGKCGSVTVRL 292
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At1g35710.1 68414.m04439 leucine-rich repeat transmembrane protein
kinase, putative similar to many predicted protein
kinases
Length = 1120
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 352 SDLVTPVTSSNW*KRQLSK-DNSASNGSGDFLAALXTQTNMTVVVANGNKCLESVRCPAR 528
+++ + + W QL + D S +N G+ A+ TN++ + NGN+ S R PA
Sbjct: 568 NNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQL--SGRVPAG 625
Query: 529 VCFCTGMIFRTLSFRDGPRKKSMIFEFF 612
+ F T + LS + + F+ F
Sbjct: 626 LSFLTNLESLDLSSNNFSSEIPQTFDSF 653
>At4g37640.1 68417.m05324 calcium-transporting ATPase 2, plasma
membrane-type / Ca(2+)-ATPase isoform 2 (ACA2) identical
to SP|O81108 Calcium-transporting ATPase 2, plasma
membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2)
{Arabidopsis thaliana}
Length = 1014
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -1
Query: 569 NDKVLKIMPVQKQTRAGQRTLSRHLLPLATTTVILVWVXSAARKS 435
ND+++K +PV ++ + R++L A I++W+ A K+
Sbjct: 866 NDELMKRLPVGRRGNFITNAMWRNILGQAVYQFIVIWILQAKGKA 910
>At2g07719.1 68415.m00969 expressed protein
Length = 161
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = -1
Query: 518 QRTLSRHLLPLATTTVIL----VWVXSAARKSPLPFEALLSLL 402
+RTL+ ++L +V+ VW+ SAA K+ +P E ++ LL
Sbjct: 37 KRTLTGYMLTFILYSVLALFVSVWLSSAAGKAGIPIEGMVFLL 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,259,095
Number of Sequences: 28952
Number of extensions: 337278
Number of successful extensions: 856
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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