Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0747.Seq
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5ZK09 Cluster: Uncharacterized protein C11orf73 homolo...    50   6e-05
UniRef50_Q53FT3 Cluster: Uncharacterized protein C11orf73; n=19;...    48   3e-04
UniRef50_Q9DD02 Cluster: Uncharacterized protein C11orf73 homolo...    46   8e-04
UniRef50_Q6DCU7 Cluster: Uncharacterized protein C11orf73 homolo...    46   0.001
UniRef50_Q0FCJ0 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  
UniRef50_Q7PLB8 Cluster: CG17374-PA.3; n=2; Drosophila melanogas...    33   6.0  
UniRef50_A6UNH4 Cluster: Putative uncharacterized protein; n=2; ...    33   7.9  

>UniRef50_Q5ZK09 Cluster: Uncharacterized protein C11orf73 homolog;
           n=5; Deuterostomia|Rep: Uncharacterized protein C11orf73
           homolog - Gallus gallus (Chicken)
          Length = 197

 Score = 49.6 bits (113), Expect = 6e-05
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = -3

Query: 358 FCTSFSVTQDQMTPTPGVSYIPLNTLHTWYQNFER 254
           F +SF+VTQ QMTP P  ++IP N +  WY+NF+R
Sbjct: 152 FASSFAVTQAQMTPNPSEAFIPANVVLKWYENFQR 186



 Score = 35.5 bits (78), Expect = 1.1
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -1

Query: 480 AQIGISIEPEANV--QLLASSVALQETNNYVTFAQKMLENLVNF 355
           AQIGIS+E   N+  Q   ++ A+   +++  F QKML+N  NF
Sbjct: 109 AQIGISVELLENLVQQTPVANAAVSSVDSFTEFTQKMLDNFYNF 152


>UniRef50_Q53FT3 Cluster: Uncharacterized protein C11orf73; n=19;
           Eumetazoa|Rep: Uncharacterized protein C11orf73 - Homo
           sapiens (Human)
          Length = 197

 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = -3

Query: 358 FCTSFSVTQDQMTPTPGVSYIPLNTLHTWYQNFER 254
           F +SF+V+Q QMTP+P   +IP N +  WY+NF+R
Sbjct: 152 FASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQR 186



 Score = 32.7 bits (71), Expect = 7.9
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 480 AQIGISIEPEANV--QLLASSVALQETNNYVTFAQKMLENLVNF 355
           AQIGIS+E   ++  Q    + A+   +++  F QKML+N  NF
Sbjct: 109 AQIGISVELLDSMAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNF 152


>UniRef50_Q9DD02 Cluster: Uncharacterized protein C11orf73 homolog;
           n=14; Coelomata|Rep: Uncharacterized protein C11orf73
           homolog - Mus musculus (Mouse)
          Length = 197

 Score = 46.0 bits (104), Expect = 8e-04
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = -3

Query: 358 FCTSFSVTQDQMTPTPGVSYIPLNTLHTWYQNFER 254
           F +SF+++Q QMTP P   +IP N +  WY+NF+R
Sbjct: 152 FASSFALSQAQMTPNPSEMFIPANVVLKWYENFQR 186



 Score = 34.3 bits (75), Expect = 2.6
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 480 AQIGISIEPEANV--QLLASSVALQETNNYVTFAQKMLENLVNFVHHSLLRKIR*HPH 313
           AQIGIS+E   ++  Q    S A+   +++  F QKML+N  NF     L + +  P+
Sbjct: 109 AQIGISVELLDSLAQQTPVGSAAVSSVDSFTQFTQKMLDNFYNFASSFALSQAQMTPN 166


>UniRef50_Q6DCU7 Cluster: Uncharacterized protein C11orf73 homolog;
           n=3; Coelomata|Rep: Uncharacterized protein C11orf73
           homolog - Xenopus laevis (African clawed frog)
          Length = 197

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = -3

Query: 358 FCTSFSVTQDQMTPTPGVSYIPLNTLHTWYQNFER 254
           F TSF+V+Q QM P P   +IP N +  WY+NF+R
Sbjct: 152 FATSFAVSQAQMIPNPSEVFIPSNVVLKWYENFQR 186



 Score = 33.5 bits (73), Expect = 4.5
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 480 AQIGISIE--PEANVQLLASSVALQETNNYVTFAQKMLENLVNF 355
           AQIGIS+E   +   Q   ++ A+   +++  F QKML+N  NF
Sbjct: 109 AQIGISVELLEQMAQQTPVANAAVSTVDSFTQFTQKMLDNFYNF 152


>UniRef50_Q0FCJ0 Cluster: Putative uncharacterized protein; n=1;
           alpha proteobacterium HTCC2255|Rep: Putative
           uncharacterized protein - alpha proteobacterium HTCC2255
          Length = 468

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -3

Query: 346 FSVTQDQMTPTPGVSY--IPLNTLHTWYQNFERGSSRILISGRIN 218
           F+  QD++     ++   +P+NT+  W + F++ S R+ IS R+N
Sbjct: 179 FAALQDRLLKNHRITVQTLPINTMPEWTRRFDKHSMRLFISDRLN 223


>UniRef50_Q7PLB8 Cluster: CG17374-PA.3; n=2; Drosophila
            melanogaster|Rep: CG17374-PA.3 - Drosophila melanogaster
            (Fruit fly)
          Length = 2284

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -1

Query: 552  KNLHELPNENKFHGQFGQQQICHNAQIGISIEPEANVQLLASSVALQETNNYVTFAQKML 373
            +NL +LP  +  +G    Q  CH   IG   E E + ++ ++   L + N Y+ F QK  
Sbjct: 1109 QNLEDLPGVHIENGSLSTQTNCHIIIIGGYEEDEVHEKITSAYNVLVD-NGYIVFRQKCA 1167

Query: 372  ENL 364
            +N+
Sbjct: 1168 KNV 1170


>UniRef50_A6UNH4 Cluster: Putative uncharacterized protein; n=2;
           Methanococcus vannielii SB|Rep: Putative uncharacterized
           protein - Methanococcus vannielii SB
          Length = 754

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = -1

Query: 552 KNLHELPNENKFHGQFGQQQICHNAQIGISIEPEANVQLLASSVALQETNNYVTFAQKML 373
           K +  LPN +     F    +  N QI + I+PE N+      +  ++ NN +TF +K L
Sbjct: 199 KTVELLPNNSDAELIFEDVLLGPNNQISVHIDPENNI------IEHKKENNQITFNEKPL 252

Query: 372 ENLVNFVHHSLLRKI 328
           E  ++ + +S +  +
Sbjct: 253 ERHISMILNSNIHPV 267


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,080,694
Number of Sequences: 1657284
Number of extensions: 10888911
Number of successful extensions: 24943
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24941
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)