Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0747.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar...    29   0.44 
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   1.8  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   5.4  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   9.4  

>SPBC21H7.06c |||inositol metabolism protein Opi10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = -1

Query: 480 AQIGISIEPEAN------VQLLASSVALQETNNYVTFAQKMLENLVNFV 352
           A +GIS+EP  N      V   AS+V  +      + AQK+L NL NF+
Sbjct: 98  AMLGISVEPLTNFTETPAVSTSASNVIAKPLPPVTSVAQKILTNLYNFL 146


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = -3

Query: 385 SENVRKLSQFCTSFSVTQDQMTPTPGVSYIPLNTLHTWYQNFERGSSRIL 236
           S++ +K+++   ++ VTQ  M+PT G    P++T  T  + F   +++++
Sbjct: 636 SDDFQKVTRMAQAY-VTQYGMSPTVGTIAYPIDTRETVQKPFSEATAQMI 684


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 408 TNNYVTFAQKMLENLVNFVHHSLLRKI 328
           + + V+FAQ  LE  +N + HSLL  I
Sbjct: 64  SKSMVSFAQVPLEEYLNLLGHSLLTSI 90


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 494  RYVTMHK*EYLLSLKPMCNYWLHLL 420
            ++V++H+ +  +S K + NY LHLL
Sbjct: 1269 QFVSLHRQKIRISRKKIFNYALHLL 1293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,784
Number of Sequences: 5004
Number of extensions: 49445
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)