Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0747.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)                    31   0.61 
SB_42835| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_20143| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
          Length = 553

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = -1

Query: 549 NLHELPNENKFHGQFGQQQICHNAQIGISIEPEANVQLLASSVALQETNNYVTFAQKMLE 370
           NLH  P+E+   G    Q + H+A  GI + P      LA + AL   NN+   A+  LE
Sbjct: 401 NLHSTPSEDTGIGSV-IQAVIHDADQGIRVNPSLPKSYLAKASALILQNNWEE-ARHALE 458

Query: 369 NL 364
            L
Sbjct: 459 KL 460


>SB_42835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 424 CCTSRNKQLCDICSENVRKLSQ 359
           CC  R    C +C E  RKLSQ
Sbjct: 34  CCNGRRGVHCWVCDETARKLSQ 55


>SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 409 NKQLCDICSENVRKLSQFCTSFSVTQDQMTPTPGVSYIPLNTL 281
           NK   D+C E   +    C SF +T + ++      ++  NTL
Sbjct: 631 NKVAADLCREVAPQALALCDSFGLTDEMLSAPIARDWVQYNTL 673


>SB_20143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 203 TITDLINSSRN*DSAGASLKVLVPCVKGVQ 292
           T   L+NS R+ + +  SLKV V C  G+Q
Sbjct: 128 TSNSLVNSQRSVNISTKSLKVTVDCSSGIQ 157


>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 203 TITDLINSSRN*DSAGASLKVLVPCVKGVQ 292
           T   L+NS R+ + +  SLKV V C  G+Q
Sbjct: 128 TSNSLVNSQRSVNISTKSLKVTVDCSSGIQ 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,478,220
Number of Sequences: 59808
Number of extensions: 356225
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)