Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0747.Seq
(648 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC021621-1|AAH21621.1| 197|Homo sapiens chromosome 11 open read... 48 4e-05
BC018080-1|AAH18080.1| 197|Homo sapiens chromosome 11 open read... 48 4e-05
BC015991-1|AAH15991.1| 197|Homo sapiens chromosome 11 open read... 48 4e-05
BC006476-1|AAH06476.1| 197|Homo sapiens chromosome 11 open read... 48 4e-05
BC001677-1|AAH01677.1| 197|Homo sapiens chromosome 11 open read... 48 4e-05
AK223198-1|BAD96918.1| 197|Homo sapiens hypothetical protein HS... 48 4e-05
AK001447-1|BAA91698.1| 197|Homo sapiens protein ( Homo sapiens ... 48 4e-05
>BC021621-1|AAH21621.1| 197|Homo sapiens chromosome 11 open reading
frame 73 protein.
Length = 197
Score = 47.6 bits (108), Expect = 4e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 358 FCTSFSVTQDQMTPTPGVSYIPLNTLHTWYQNFER 254
F +SF+V+Q QMTP+P +IP N + WY+NF+R
Sbjct: 152 FASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQR 186
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 480 AQIGISIEPEANV--QLLASSVALQETNNYVTFAQKMLENLVNF 355
AQIGIS+E ++ Q + A+ +++ F QKML+N NF
Sbjct: 109 AQIGISVELLDSMAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNF 152
>BC018080-1|AAH18080.1| 197|Homo sapiens chromosome 11 open reading
frame 73 protein.
Length = 197
Score = 47.6 bits (108), Expect = 4e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 358 FCTSFSVTQDQMTPTPGVSYIPLNTLHTWYQNFER 254
F +SF+V+Q QMTP+P +IP N + WY+NF+R
Sbjct: 152 FASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQR 186
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 480 AQIGISIEPEANV--QLLASSVALQETNNYVTFAQKMLENLVNF 355
AQIGIS+E ++ Q + A+ +++ F QKML+N NF
Sbjct: 109 AQIGISVELLDSMAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNF 152
>BC015991-1|AAH15991.1| 197|Homo sapiens chromosome 11 open reading
frame 73 protein.
Length = 197
Score = 47.6 bits (108), Expect = 4e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 358 FCTSFSVTQDQMTPTPGVSYIPLNTLHTWYQNFER 254
F +SF+V+Q QMTP+P +IP N + WY+NF+R
Sbjct: 152 FASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQR 186
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 480 AQIGISIEPEANV--QLLASSVALQETNNYVTFAQKMLENLVNF 355
AQIGIS+E ++ Q + A+ +++ F QKML+N NF
Sbjct: 109 AQIGISVELLDSMAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNF 152
>BC006476-1|AAH06476.1| 197|Homo sapiens chromosome 11 open reading
frame 73 protein.
Length = 197
Score = 47.6 bits (108), Expect = 4e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 358 FCTSFSVTQDQMTPTPGVSYIPLNTLHTWYQNFER 254
F +SF+V+Q QMTP+P +IP N + WY+NF+R
Sbjct: 152 FASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQR 186
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 480 AQIGISIEPEANV--QLLASSVALQETNNYVTFAQKMLENLVNF 355
AQIGIS+E ++ Q + A+ +++ F QKML+N NF
Sbjct: 109 AQIGISVELLDSMAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNF 152
>BC001677-1|AAH01677.1| 197|Homo sapiens chromosome 11 open reading
frame 73 protein.
Length = 197
Score = 47.6 bits (108), Expect = 4e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 358 FCTSFSVTQDQMTPTPGVSYIPLNTLHTWYQNFER 254
F +SF+V+Q QMTP+P +IP N + WY+NF+R
Sbjct: 152 FASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQR 186
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 480 AQIGISIEPEANV--QLLASSVALQETNNYVTFAQKMLENLVNF 355
AQIGIS+E ++ Q + A+ +++ F QKML+N NF
Sbjct: 109 AQIGISVELLDSMAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNF 152
>AK223198-1|BAD96918.1| 197|Homo sapiens hypothetical protein
HSPC138 variant protein.
Length = 197
Score = 47.6 bits (108), Expect = 4e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 358 FCTSFSVTQDQMTPTPGVSYIPLNTLHTWYQNFER 254
F +SF+V+Q QMTP+P +IP N + WY+NF+R
Sbjct: 152 FASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQR 186
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 480 AQIGISIEPEANV--QLLASSVALQETNNYVTFAQKMLENLVNF 355
AQIGIS+E ++ Q + A+ +++ F QKML+N NF
Sbjct: 109 AQIGISVELLDSMAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNF 152
>AK001447-1|BAA91698.1| 197|Homo sapiens protein ( Homo sapiens
cDNA FLJ10585 fis, clone NT2RP2003793. ).
Length = 197
Score = 47.6 bits (108), Expect = 4e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -3
Query: 358 FCTSFSVTQDQMTPTPGVSYIPLNTLHTWYQNFER 254
F +SF+V+Q QMTP+P +IP N + WY+NF+R
Sbjct: 152 FASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQR 186
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 480 AQIGISIEPEANV--QLLASSVALQETNNYVTFAQKMLENLVNF 355
AQIGIS+E ++ Q + A+ +++ F QKML+N NF
Sbjct: 109 AQIGISVELLDSMAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNF 152
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,579,770
Number of Sequences: 237096
Number of extensions: 1751217
Number of successful extensions: 3350
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3348
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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