Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0747.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17120.1 68417.m02578 expressed protein                             32   0.29 
At5g56860.1 68418.m07095 zinc finger (GATA type) family protein ...    28   4.7  
At2g21810.1 68415.m02592 CHP-rich zinc finger protein, putative        28   4.7  
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4...    27   8.1  
At2g37800.1 68415.m04641 DC1 domain-containing protein contains ...    27   8.1  

>At4g17120.1 68417.m02578 expressed protein
          Length = 1661

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 32  LPRKAKILSKIYYTCFYISGALPI 103
           L +K++ LS + YTC+++ GALP+
Sbjct: 450 LLKKSRFLSLLIYTCYFLQGALPL 473


>At5g56860.1 68418.m07095 zinc finger (GATA type) family protein
           similar to unknown protein (pir |T04270)
          Length = 398

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 94  PTNYSSLGNSLPSEQAYLVF-INQNLNTHCSLTLTLHNNH 210
           P+N SS  +S+ S  +YL F IN   + H +   T H +H
Sbjct: 44  PSNSSSSSSSISSLSSYLPFLINSQEDQHVAYNNTYHADH 83


>At2g21810.1 68415.m02592 CHP-rich zinc finger protein, putative 
          Length = 128

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 415 SRNKQLCDICSENVRKLSQFC 353
           S+ K  CDIC EN+   + FC
Sbjct: 68  SQEKMKCDICRENIYDFNLFC 88


>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
            identical to AtMRP4 GI:2959767 from [Arabidopsis
            thaliana]
          Length = 1516

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 346  FSVTQDQMTPTPGVSYIPLNTLHTWYQNFERGSSRIL 236
            F VT     PT     IPL  L+ WY+N+   SSR L
Sbjct: 1085 FIVTCQYAWPT-AFFVIPLGWLNIWYRNYYLASSREL 1120


>At2g37800.1 68415.m04641 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 396

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 418 TSRNKQLCDICSENVRKLSQFC 353
           T +NK++CDIC E+   L   C
Sbjct: 217 THQNKRMCDICDESAEGLYYQC 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,893,409
Number of Sequences: 28952
Number of extensions: 247519
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)