Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0746.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    89   5e-19
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   6.6  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   8.7  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 38/74 (51%), Positives = 50/74 (67%)
 Frame = -3

Query: 248 ASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*H 69
           A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+        H +  HH GFE    Y H
Sbjct: 196 APFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYYWH 255

Query: 68  FVDVV*LFLYISIY 27
           F DVV LFLY++IY
Sbjct: 256 FCDVVWLFLYLTIY 269



 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
 Frame = -1

Query: 481 LSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRL 308
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 307 FLTILLGFYFTILQAYE 257
           ++TI L F F   QAYE
Sbjct: 176 YMTIALSFLFLGGQAYE 192



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 621 RDISREGTYQGKHTILVNKGLR*G 550
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 191 FHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HF 66
           +  I +  G +++   YIR + +H   + HF  EA A + HF
Sbjct: 130 YGNIKIFSGKIYIASQYIRTIKDHNEVHFHF-LEAIAVHLHF 170


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 343 IENNFSQTKQRLFLTILLGFYFTILQAYE 257
           +  ++S T  RL++ ++ G Y + L++Y+
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,939
Number of Sequences: 5004
Number of extensions: 36280
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)