Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0745.Seq
(628 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 151 1e-35
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 151 2e-35
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 137 2e-31
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 126 3e-28
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 117 3e-25
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 114 2e-24
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 109 4e-23
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 105 1e-21
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 104 2e-21
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 101 1e-20
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 99 4e-20
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 95 1e-18
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 81 2e-14
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 75 1e-12
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 73 4e-12
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 73 4e-12
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 69 9e-11
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 67 3e-10
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 65 1e-09
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 65 1e-09
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 62 8e-09
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 62 1e-08
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 61 2e-08
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 58 1e-07
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 58 2e-07
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 57 4e-07
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 56 5e-07
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 56 7e-07
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 54 3e-06
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 54 3e-06
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 50 5e-05
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 50 5e-05
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 48 2e-04
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 46 7e-04
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 44 0.003
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 44 0.004
UniRef50_Q8DW98 Cluster: 50S ribosomal protein L13; n=42; Lactob... 37 0.45
UniRef50_Q5F3J4 Cluster: Putative uncharacterized protein; n=3; ... 36 0.79
UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32; Bacter... 36 0.79
UniRef50_Q9KEG4 Cluster: BH0888 protein; n=9; Bacillaceae|Rep: B... 36 1.1
UniRef50_Q6CAB1 Cluster: Similar to ca|CA3692|IPF4876 Candida al... 36 1.1
UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1; Cyanidi... 35 1.4
UniRef50_A4RYI1 Cluster: Plastid ribosomal protein L13 large rib... 34 2.4
UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1; ... 33 4.2
UniRef50_Q9TLV3 Cluster: Putative uncharacterized protein rpl13;... 33 4.2
UniRef50_Q855Z2 Cluster: Gp80; n=1; Mycobacterium phage Barnyard... 33 4.2
UniRef50_A2AX70 Cluster: Gustatory receptor candidate 8; n=1; Tr... 33 4.2
UniRef50_Q0UH25 Cluster: Putative uncharacterized protein; n=1; ... 33 4.2
UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal ... 33 5.6
UniRef50_Q54I73 Cluster: Putative uncharacterized protein; n=1; ... 32 9.8
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 151 bits (367), Expect = 1e-35
Identities = 65/88 (73%), Positives = 78/88 (88%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
RGHLLGRLA+VIAK +L G KVVVVRCE + +SG+FFRNK+K +++LRKRCNVNPARGPF
Sbjct: 14 RGHLLGRLASVIAKQILNGRKVVVVRCEDLQLSGHFFRNKIKFLAYLRKRCNVNPARGPF 73
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
HFRAPS++LWK VRGM+PHKT+RG L
Sbjct: 74 HFRAPSRMLWKAVRGMVPHKTKRGHNAL 101
Score = 96.3 bits (229), Expect = 5e-19
Identities = 44/113 (38%), Positives = 61/113 (53%)
Frame = +2
Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
P + + NAL+RL+ Y+G P PFD CL+P R +C VGR++HE+GWK
Sbjct: 91 PHKTKRGHNALKRLKVYEGIPSPFDRQKRLCVPTAMRQLCLRPDRKFCDVGRVAHEVGWK 150
Query: 413 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVRRCPKATTPFTTIIQSYGY 571
YRDVV LE KRK K+ + KKLK++T +++ YGY
Sbjct: 151 YRDVVNNLEAKRKIKSRLSYLHSKKLKKLTWKARTAVADKVKDQDAVLRKYGY 203
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 151 bits (365), Expect = 2e-35
Identities = 64/88 (72%), Positives = 80/88 (90%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
RGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+RNK+K +++LRKRCNVNPARGPF
Sbjct: 14 RGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPF 73
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
HFRAPS+I +K VRGMIPHKT+RG+ L
Sbjct: 74 HFRAPSRIFYKAVRGMIPHKTKRGQAAL 101
Score = 101 bits (242), Expect = 1e-20
Identities = 47/113 (41%), Positives = 63/113 (55%)
Frame = +2
Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
P + + Q AL RLR +DG P P+D L+ R YC VGRLSHE+GW
Sbjct: 91 PHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWH 150
Query: 413 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVRRCPKATTPFTTIIQSYGY 571
Y+DV++ LE KRK K + + ++LK++T KA PF II+SYGY
Sbjct: 151 YQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 137 bits (331), Expect = 2e-31
Identities = 61/88 (69%), Positives = 72/88 (81%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
RGHLLGRLAA +AK LL G +VV VR E+INISG+ FRNKLK +FL+KR N NP RGPF
Sbjct: 11 RGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPF 70
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
HFR+P++ILW+T+RGMIPHKT RG L
Sbjct: 71 HFRSPARILWRTIRGMIPHKTPRGAAAL 98
Score = 74.5 bits (175), Expect = 2e-12
Identities = 35/104 (33%), Positives = 53/104 (50%)
Frame = +2
Query: 260 ALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 439
AL RL+ ++G PPP+D LKPGR +C +GRL+ E+GW++ D+V +LE
Sbjct: 97 ALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLE 156
Query: 440 DKRKGKAVKRVAYEKKLKRITKDLVRRCPKATTPFTTIIQSYGY 571
+KRK K+ A +K L + T + YG+
Sbjct: 157 EKRKTKSAAFYARKKTLVNLRAKAAVAVASKTANIQKELDHYGF 200
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 126 bits (305), Expect = 3e-28
Identities = 55/88 (62%), Positives = 69/88 (78%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
R H+LGRL++++AK LL G +VVVVRCE+I +SG R K+K + FLRKR N P+ GP
Sbjct: 17 RHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYLRFLRKRMNTKPSHGPI 76
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
HFRAPSKILW+T+RGMIPHKT+RG L
Sbjct: 77 HFRAPSKILWRTIRGMIPHKTKRGAAAL 104
Score = 72.5 bits (170), Expect = 7e-12
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Frame = +2
Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
P + + AL RL+ Y+G PPP+D L+ G YC +G+LS E+GW
Sbjct: 94 PHKTKRGAAALARLKVYEGVPPPYDKIKRMVIPDALKVLRLQAGHKYCLLGKLSSEVGWN 153
Query: 413 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVR--RCPKATT 538
+ D +++LEDKRK +A +V YE++ K++ K V+ R P+ ++
Sbjct: 154 HYDTIKELEDKRKERA--QVTYERR-KQLAKLRVKAERLPRRSS 194
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 117 bits (281), Expect = 3e-25
Identities = 53/88 (60%), Positives = 65/88 (73%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
+GHLLGRLA+ +AK LL G ++VVVR E INISG+ FRN++K FL K N NP RG
Sbjct: 83 KGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQ 142
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
HFRAPS+I W+ VRGM+PHKT +G L
Sbjct: 143 HFRAPSRIFWRAVRGMLPHKTPKGAAAL 170
Score = 52.0 bits (119), Expect = 1e-05
Identities = 25/79 (31%), Positives = 43/79 (54%)
Frame = +2
Query: 260 ALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 439
AL RL+ ++G P P+D L+ R C +G LS +GW + ++ KLE
Sbjct: 169 ALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLE 228
Query: 440 DKRKGKAVKRVAYEKKLKR 496
+KR+ +A + ++KK+K+
Sbjct: 229 EKRRARA--KTYHDKKVKQ 245
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 114 bits (274), Expect = 2e-24
Identities = 54/81 (66%), Positives = 65/81 (80%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
RGHLLG LAA +AK +L G KVVVV E INISGNF+RNKLK ++FL K+ N NP+RGP+
Sbjct: 12 RGHLLGCLAATVAKQVL-GCKVVVVHYEGINISGNFYRNKLKYLAFLCKQMNTNPSRGPY 70
Query: 183 HFRAPSKILWKTVRGMIPHKT 245
F+APS+I W T RGM+PHKT
Sbjct: 71 RFQAPSRIFWWTARGMLPHKT 91
Score = 61.7 bits (143), Expect = 1e-08
Identities = 27/72 (37%), Positives = 44/72 (61%)
Frame = +2
Query: 353 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVRRCPKA 532
LKP R + ++GRL+H++GWKY+ V LE+ RK KA +K+L R+ K + K
Sbjct: 98 LKPTRKFAYLGRLAHKVGWKYQAVTATLEENRKEKAKIHYWKKKQLMRLWKQAKKNVEKK 157
Query: 533 TTPFTTIIQSYG 568
T +T ++++G
Sbjct: 158 TDKYTEFLKTHG 169
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 109 bits (263), Expect = 4e-23
Identities = 51/96 (53%), Positives = 65/96 (67%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
+ H+LGR AAV+AK LL G K+ VVRCEQ+NI+G RNK+K + +LRKR NP +GPF
Sbjct: 30 KDHVLGRAAAVVAKQLLLGKKITVVRCEQLNIAGTEIRNKIKYLQYLRKRKLTNPTKGPF 89
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLLGGYVHMMG 290
H RAPS + +TVR M+P T+RG L V G
Sbjct: 90 HHRAPSDVFVRTVRSMLPRYTKRGMKALNSLVAYEG 125
Score = 46.0 bits (104), Expect = 7e-04
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
Frame = +2
Query: 233 PTQNRAWQNALRRLRTYDGCPPPF-DNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGW 409
P + AL L Y+G PP C + R Y +G + +GW
Sbjct: 107 PRYTKRGMKALNSLVAYEGIPPNVVRTGGRVVIPRAQRHVCYRSERPYTVLGNMCKHVGW 166
Query: 410 KYRDVVRKLEDKRKGKAVKRVAYEKKL----KRITKDLVRRCPKATTPFTTIIQSYGY 571
KY DVV LE R KA + + KL K K+ + + PK +++ +GY
Sbjct: 167 KYSDVVANLEKARVEKASRHHEKQAKLRDAWKSARKEALAKMPKHN---VEVLKKFGY 221
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 105 bits (251), Expect = 1e-21
Identities = 44/88 (50%), Positives = 65/88 (73%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
+ HLLGR+A++ AK +L+G+K++++R E +I+G RN K S +K+ N NP RGPF
Sbjct: 9 KNHLLGRMASICAKKILQGDKIIIIRSELTSITGKLGRNVNKYKSIFKKKTNTNPRRGPF 68
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
HF++PSKIL++T++ MIPHKT RG L
Sbjct: 69 HFKSPSKILYQTIKRMIPHKTMRGSKAL 96
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 104 bits (249), Expect = 2e-21
Identities = 44/84 (52%), Positives = 61/84 (72%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
+GHL GRLA++++K LL+G VVVVR E I +SG R ++ + KR N NP +GP+
Sbjct: 10 KGHLFGRLASIVSKQLLQGQHVVVVRTEGICMSGGMVRRRMAHDRYKNKRMNTNPKKGPY 69
Query: 183 HFRAPSKILWKTVRGMIPHKTERG 254
H+ +PS++ WKTVRGM+PHKT RG
Sbjct: 70 HYTSPSRLFWKTVRGMLPHKTVRG 93
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +2
Query: 260 ALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 439
A R + Y+G P P+D L G +C +G +IGWK+ +V++LE
Sbjct: 96 AFERFKAYEGIPAPYDKVKRAVVPEALKVLRLGEGHRFCVLGDFCEQIGWKHGAIVKELE 155
Query: 440 DKRKGKAVKRVAYEKK 487
KR+ A + A +K+
Sbjct: 156 AKRQTAASEYWAQKKE 171
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 101 bits (242), Expect = 1e-20
Identities = 46/84 (54%), Positives = 63/84 (75%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
+GH+LGRL+A++AK LL G++V +VRCE+ ISG F K + + KR N N RGPF
Sbjct: 9 KGHILGRLSAIVAKELLHGHEVALVRCEKAIISGAFRDVKAHYLKKMHKRTNFNHLRGPF 68
Query: 183 HFRAPSKILWKTVRGMIPHKTERG 254
HFRAP++I+ +T+RGMIP+KT RG
Sbjct: 69 HFRAPAEIVRRTIRGMIPYKTVRG 92
Score = 56.0 bits (129), Expect = 7e-07
Identities = 25/64 (39%), Positives = 34/64 (53%)
Frame = +2
Query: 257 NALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKL 436
+A+ RLR YDG PP CL+P R C VGR++HEIGW++ V +
Sbjct: 94 DAMSRLRVYDGIPPCCARYKRVVCPSAMAYLCLRPERRRCEVGRVAHEIGWQHAADVERY 153
Query: 437 EDKR 448
E +R
Sbjct: 154 EKRR 157
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 99 bits (238), Expect = 4e-20
Identities = 40/75 (53%), Positives = 53/75 (70%)
Frame = +2
Query: 350 CLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVRRCPK 529
CLKPGR YCHVGRLSHE+GWKY+ V+ LE KR+ K + +K+KR+TK ++ K
Sbjct: 4 CLKPGRKYCHVGRLSHEVGWKYQKVIESLEHKRQVKVAIKARKHRKMKRLTKKASKKIEK 63
Query: 530 ATTPFTTIIQSYGYN 574
P+T +I+SYGYN
Sbjct: 64 QVAPYTAVIKSYGYN 78
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 95.1 bits (226), Expect = 1e-18
Identities = 46/84 (54%), Positives = 56/84 (66%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
+GH+ GRLAA +AK LL+G KVVVVRCE+I ++G FL K N NP GPF
Sbjct: 10 KGHIQGRLAAAVAKQLLKGRKVVVVRCEEIELNGQHKFTVHTYERFLNKTTNSNPRDGPF 69
Query: 183 HFRAPSKILWKTVRGMIPHKTERG 254
H RAP +I + VRGMIP+KT RG
Sbjct: 70 HQRAPHEIFARAVRGMIPYKTHRG 93
Score = 43.2 bits (97), Expect = 0.005
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = +2
Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
P + +A L+ Y+G P + + + R +GRLS +GWK
Sbjct: 87 PYKTHRGADAFANLQCYEGIPAKYVSYKRLVIPHALRCVSIHTDRPTTKLGRLSTTMGWK 146
Query: 413 YRDVVRKLEDKRKGKAVK 466
Y +VV +LE++RK ++ K
Sbjct: 147 YGNVVAQLEEQRKAESAK 164
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 81.0 bits (191), Expect = 2e-14
Identities = 41/84 (48%), Positives = 52/84 (61%)
Frame = +3
Query: 6 GHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFH 185
G + G+LAA +AK+LLEG +V VV E+ G+ R K +L KRC VNP RGPFH
Sbjct: 13 GQVAGKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLERAMDKFKQYLNKRCLVNPRRGPFH 72
Query: 186 FRAPSKILWKTVRGMIPHKTERGR 257
FR P L K +R MI +K RG+
Sbjct: 73 FREPRMHLAKIIRRMISYKKPRGK 96
Score = 36.7 bits (81), Expect = 0.45
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +2
Query: 260 ALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 439
A+ RL TY+G P + + P R Y +G+L GWK+ + + L
Sbjct: 98 AMSRLATYEGIPRELEGQPRYKVTCAFVKYTGNPNR-YVTLGKLLSMFGWKHAEAAKSLT 156
Query: 440 DKRKGK----AVKRVAYEKKLKRITKD 508
D+ K + ++++ +KK++ + D
Sbjct: 157 DELKERESLASLQKKDLDKKIEELKTD 183
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 75.4 bits (177), Expect = 1e-12
Identities = 33/83 (39%), Positives = 52/83 (62%)
Frame = +3
Query: 9 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 188
H+ GRLA+ +AK+LLEGN+V ++ CE++ ISG + FL+ ++P GP+H
Sbjct: 7 HIAGRLASNVAKMLLEGNRVSIINCEKVMISGKRASIVREYRDFLKIASIIHPEHGPYHP 66
Query: 189 RAPSKILWKTVRGMIPHKTERGR 257
R P I+ + +RGM+P K G+
Sbjct: 67 RRPDTIMTRMIRGMLPRKKPSGK 89
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 73.3 bits (172), Expect = 4e-12
Identities = 32/70 (45%), Positives = 48/70 (68%)
Frame = +3
Query: 6 GHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFH 185
GH+LGR+A+V+AK LL G K+V+VRCE + + G ++ + RKR N NP RG FH
Sbjct: 18 GHVLGRVASVVAKHLLLGQKIVLVRCEDLQVCGTLKMRLVQWELYQRKRVNTNPTRGAFH 77
Query: 186 FRAPSKILWK 215
R+P++++ K
Sbjct: 78 HRSPAEMVRK 87
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 73.3 bits (172), Expect = 4e-12
Identities = 40/86 (46%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Frame = +3
Query: 6 GHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN--FFRNKLKLMSFLRKRCNVNPARGP 179
G +LGRLA+ +AK+LLEG +VV+V E+ I+GN +K K + LR NP RGP
Sbjct: 8 GLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTL--TNPRRGP 65
Query: 180 FHFRAPSKILWKTVRGMIPHKTERGR 257
F+ + +I+ +T+RGM+P KT+RGR
Sbjct: 66 FYPKRSDEIVRRTIRGMLPWKTDRGR 91
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 68.9 bits (161), Expect = 9e-11
Identities = 40/88 (45%), Positives = 49/88 (55%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
R H+L RLA++IAK LL G +VV R N P+ GP
Sbjct: 17 RHHMLSRLASIIAKELLNGKRVV--------------------------RMNTKPSHGPI 50
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
HFR+P+KILW+TVRGMIPHKT+RG L
Sbjct: 51 HFRSPAKILWRTVRGMIPHKTKRGEAAL 78
Score = 54.4 bits (125), Expect = 2e-06
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +2
Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
P + + + AL RL+ Y+ PP+D L+PG YC +G+LS E+GW
Sbjct: 68 PHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWN 127
Query: 413 YRDVVR 430
Y D +R
Sbjct: 128 YYDTIR 133
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 67.3 bits (157), Expect = 3e-10
Identities = 35/82 (42%), Positives = 55/82 (67%)
Frame = +3
Query: 12 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 191
+LGRLA+V+AK +L+G ++ V+ E+ I+G +N +K +L+K +P +GPF+ R
Sbjct: 24 VLGRLASVVAKRILKGERIAVINTEKAIITGK--KNTIK-EEWLQKIQRGDPKKGPFYPR 80
Query: 192 APSKILWKTVRGMIPHKTERGR 257
P I + VRGM+P KT+RGR
Sbjct: 81 RPDLIFRRVVRGMLPWKTKRGR 102
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 64.9 bits (151), Expect = 1e-09
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = +3
Query: 9 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 188
H+ GRL++ +AK+L +G++V +V CE+I SG + FL +NP GP H+
Sbjct: 21 HIAGRLSSNVAKLLKQGHRVSIVNCEKIMYSGTRSNLIKEYREFLEINSIINPKHGPVHY 80
Query: 189 RAPSKILWKTVRGMIPH 239
R P I+ K +R M+P+
Sbjct: 81 RRPDTIITKMIRQMLPY 97
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 64.9 bits (151), Expect = 1e-09
Identities = 34/84 (40%), Positives = 52/84 (61%)
Frame = +3
Query: 6 GHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFH 185
GH+LGRL++ IAK LL G ++VVV E+ I+G+ + + + K + +GP+
Sbjct: 23 GHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKEKGPYF 79
Query: 186 FRAPSKILWKTVRGMIPHKTERGR 257
R P +I +TVRGM+P K+ RGR
Sbjct: 80 PRHPERIFKRTVRGMLPWKSSRGR 103
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 62.5 bits (145), Expect = 8e-09
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +3
Query: 12 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 188
+LGRLA+++AK L + +VRCE+I ISG R K+K M FLR+R N P+ GP F
Sbjct: 1 MLGRLASIVAKELSMVRRSFLVRCEEICISGGLGRQKMKYMRFLRRRMNTKPSHGPITF 59
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 61.7 bits (143), Expect = 1e-08
Identities = 35/87 (40%), Positives = 55/87 (63%)
Frame = +3
Query: 6 GHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFH 185
G +LGRLA+++A+ L G +V +V E+ I+G+ N +K +L+K + +GPF+
Sbjct: 13 GLVLGRLASIVARNLKRGYRVKIVNAEKAIITGD--PNMVK-KEWLQKVKRGDYYKGPFY 69
Query: 186 FRAPSKILWKTVRGMIPHKTERGRMLL 266
+ P IL + +RGM+P KT RGR LL
Sbjct: 70 PKRPDNILKRVIRGMLPRKTARGRELL 96
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 61.3 bits (142), Expect = 2e-08
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +3
Query: 6 GHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLK-LMSFLRKRCNVNP-ARGP 179
GH+ GRLA+V+AK LL+G++VVVV E+I I+G R K L ++ + NP RGP
Sbjct: 14 GHIAGRLASVVAKRLLKGDRVVVVNAEKIVITGKPKRVVEKYLKRWVEWKTYYNPELRGP 73
Query: 180 FHFRAPSKILWKTVRGMIPHKTERGR 257
+ + P ++ + VRGM+P + GR
Sbjct: 74 KYPKTPDRLFKRMVRGMLPMEKTIGR 99
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 58.4 bits (135), Expect = 1e-07
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Frame = +3
Query: 6 GHLLGRLAAVIAKVLLE--GNKVVVVRCEQINISGNFFRNKLKLMSFLRK----RCNVNP 167
GH+ GRLA IAK LLE ++VVV E++ I+G+ K+ + F RK R + NP
Sbjct: 25 GHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEWRTHYNP 81
Query: 168 AR-GPFHFRAPSKILWKTVRGMIPHKTERGRMLL 266
+ GP R P ++ + VRGM+P K+E GR L
Sbjct: 82 EKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSAL 115
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 57.6 bits (133), Expect = 2e-07
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGN-KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGP 179
+G +LGRLA+ +AK LL G+ KV ++ E+ ISG+ L + R GP
Sbjct: 7 KGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGS---RAATLREYRETRDRGATEFGP 63
Query: 180 FHFRAPSKILWKTVRGMIPHKTERGR 257
+ + P +IL +T+RGM+P+K RGR
Sbjct: 64 YFPKRPDRILKRTIRGMLPYKRARGR 89
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 56.8 bits (131), Expect = 4e-07
Identities = 30/88 (34%), Positives = 50/88 (56%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
R +LGR+++ +A+ +L+G V VV E+ I+GN + M R + GP+
Sbjct: 15 RDCILGRVSSKVAQRVLDGETVAVVNAERAVITGN----EEATMETYHTRAELGSDSGPY 70
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
+ + P +I + +RGM+P+KTE GR L
Sbjct: 71 YPKRPDRIFKRAIRGMLPYKTEDGREAL 98
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 56.4 bits (130), Expect = 5e-07
Identities = 29/85 (34%), Positives = 50/85 (58%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
R ++GR+A+ +A+ L+G V VV E+ I+G + +++ KR ++ G F
Sbjct: 15 RDCIMGRVASQVAEQALDGETVAVVNAERAVITGR----EEQIVEKYEKRVDIGNDNGYF 70
Query: 183 HFRAPSKILWKTVRGMIPHKTERGR 257
+ + P I +T+RGM+PHK +RGR
Sbjct: 71 YPKRPDGIFKRTIRGMLPHKKQRGR 95
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 56.0 bits (129), Expect = 7e-07
Identities = 29/88 (32%), Positives = 49/88 (55%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
R L+GRLA+ I +L +G + V+RC+ + SG + +++ + NP +GP+
Sbjct: 10 RNQLIGRLASNIVILLKKGYTLKVIRCKDLVFSGRYEHVYNRILKKKNLKTRTNPNKGPY 69
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
F PS +L K V+GM+ +K + LL
Sbjct: 70 FFSNPSSLLKKIVKGML-NKLNKSHTLL 96
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 54.0 bits (124), Expect = 3e-06
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +3
Query: 6 GHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPAR-GPF 182
G +LGR+A+ + ++L EG KV++V E+ ISG R L + NP R G
Sbjct: 16 GQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNPYRNGIR 75
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
R+P I+ +T+RGM+P K+ +GR +L
Sbjct: 76 RPRSPINIVKRTIRGMLP-KSSKGRRML 102
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 54.0 bits (124), Expect = 3e-06
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPAR-GPFHF 188
++GRLA+ +AK+ L G ++ VV E+ ++GN K + ++ NP + GP +
Sbjct: 10 VVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNPKKMGPKYP 69
Query: 189 RAPSKILWKTVRGMIPHKTERG 254
R P I+ + +RGM+P+K RG
Sbjct: 70 RRPDDIVRRVIRGMLPYKKPRG 91
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 50.0 bits (114), Expect = 5e-05
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Frame = +3
Query: 12 LLGRLAAVIAKVLL----EGN--KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPAR 173
+LGRLA+ IAK LL EG+ +V+++ E ++G ++++ L + RK +P +
Sbjct: 15 VLGRLASHIAKTLLVTRREGDPKRVIIINAEMAIVTGP--KDRI-LADYDRKYKLNHPRK 71
Query: 174 GPFHFRAPSKILWKTVRGMIPH-KTERGRMLLGGYVHMMG 290
GPF R P IL +TVRGM+P+ K GR + M+G
Sbjct: 72 GPFFPRMPDMILKRTVRGMLPYQKKSSGRQAVKDLRVMIG 111
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 50.0 bits (114), Expect = 5e-05
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +2
Query: 392 SHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVRRCPKATTPFTTIIQSYGY 571
+HE+GW+Y+ +V KLE+KRK K +K ++ + + + T + +++ YGY
Sbjct: 1 AHEVGWQYQGIVEKLEEKRKVKGTAYYTKKKAEMKLKRQAIEKAKAKTAVYDKVLEQYGY 60
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 48.0 bits (109), Expect = 2e-04
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +3
Query: 6 GHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN-FFRNKLKLMSFLRKRCNVNPARGPF 182
G ++GRLA+V+AK+LL G +V VV E+I +SG+ + + L + + + P
Sbjct: 17 GMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGDPRMVVESYRTTVLGVKSHFSHKWRPK 76
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
R P ++ VRGM+P RGR L
Sbjct: 77 RPRTPQRLFKHAVRGMLPKNKARGRRAL 104
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 46.0 bits (104), Expect = 7e-04
Identities = 23/82 (28%), Positives = 44/82 (53%)
Frame = +3
Query: 9 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 188
H+ GRL++ +AK LL G + +V ++ I+G R + + F R + +GP++
Sbjct: 9 HIYGRLSSYVAKKLLNGESITIVNASKVVITG---RKEFIIDKFNNLRNTGSIRKGPYYP 65
Query: 189 RAPSKILWKTVRGMIPHKTERG 254
+ +IL +++ M+P K G
Sbjct: 66 KTADRILKRSIGDMLPKKKTHG 87
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 44.0 bits (99), Expect = 0.003
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 12 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPAR-GPFHF 188
+LGR++ IAK+L G KV VV E+ ISG R + NP R G
Sbjct: 16 ILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNPYRQGIRRP 75
Query: 189 RAPSKILWKTVRGMIPHKTERGRML 263
R P I+ +TVRGM+P K + G+ +
Sbjct: 76 RNPINIVKRTVRGMLP-KNKLGKQI 99
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 43.6 bits (98), Expect = 0.004
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 260 ALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 400
AL RL+ Y+G PPP+D L+PG YC +G+LS E
Sbjct: 13 ALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 59
>UniRef50_Q8DW98 Cluster: 50S ribosomal protein L13; n=42;
Lactobacillales|Rep: 50S ribosomal protein L13 -
Streptococcus mutans
Length = 148
Score = 36.7 bits (81), Expect = 0.45
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Frame = +3
Query: 15 LGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKLMSFLRKRCN 158
LGRL+AV+A VL NK V+V+ E++ ++G NK+ +
Sbjct: 27 LGRLSAVVASVLRGKNKPTFTPHTDTGDFVIVINAEKVKLTGKKAANKIYYTHSMYPGGL 86
Query: 159 VNPARGPFHFRAPSKILWKTVRGMIPHKT 245
+ G + +++ K+V+GM+PH T
Sbjct: 87 KQISAGELRSKNAVRLIEKSVKGMLPHNT 115
>UniRef50_Q5F3J4 Cluster: Putative uncharacterized protein; n=3;
Gallus gallus|Rep: Putative uncharacterized protein -
Gallus gallus (Chicken)
Length = 734
Score = 35.9 bits (79), Expect = 0.79
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -1
Query: 547 SEWCCRLRTPSHQILGDPLKFLFIGNSLNSLALPL 443
S+ C + R P+ +ILG+P K LFI +S +L LPL
Sbjct: 223 SKCCPQQRMPAGRILGNPEKILFIFDSFEALGLPL 257
>UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32;
Bacteria|Rep: 50S ribosomal protein L13 -
Prochlorococcus marinus (strain MIT 9313)
Length = 150
Score = 35.9 bits (79), Expect = 0.79
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Frame = +3
Query: 15 LGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKLMSFLRKRCN 158
LGRLA +A VL NK VVVV ++I +SGN KL R
Sbjct: 26 LGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRRHSGRPGGM 85
Query: 159 VNPARGPFHFRAPSKILWKTVRGMIPHKTERGRML 263
R P +I+ K ++GM+PH GR L
Sbjct: 86 KVETFQALQDRLPERIVEKAIKGMLPHNA-LGRQL 119
>UniRef50_Q9KEG4 Cluster: BH0888 protein; n=9; Bacillaceae|Rep:
BH0888 protein - Bacillus halodurans
Length = 268
Score = 35.5 bits (78), Expect = 1.1
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 401 IGWKYRDVVRKLEDKRKGKAVKRVAY-EKKLKRITKDLVRRCPKA 532
+ W+Y+ V + + D R GK+VK + Y +++ K++T L + PK+
Sbjct: 119 VNWEYQRVNKNVLDNRGGKSVKTLTYNQEEQKKVTGGLTAQIPKS 163
>UniRef50_Q6CAB1 Cluster: Similar to ca|CA3692|IPF4876 Candida
albicans unknown function; n=5; Saccharomycetales|Rep:
Similar to ca|CA3692|IPF4876 Candida albicans unknown
function - Yarrowia lipolytica (Candida lipolytica)
Length = 414
Score = 35.5 bits (78), Expect = 1.1
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 380 VGRLSHEIGWKYR-DVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVRRCPKA 532
V R S + W Y DV DK + V++V YE + R+ + +RR PK+
Sbjct: 258 VERASWYVSWDYNLDVSHVYNDKHTEETVRQVPYENFVVRVERQTLRRLPKS 309
>UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1;
Cyanidioschyzon merolae|Rep: 50S ribosomal protein L13 -
Cyanidioschyzon merolae (Red alga)
Length = 98
Score = 35.1 bits (77), Expect = 1.4
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNK--VVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARG 176
+ +LGRLA+ + K LL + + +V+ QI ++GN ++NK S+ R +
Sbjct: 6 KDEILGRLASRVVKTLLTQSVTCIEIVQANQIQVTGNKYKNK----SYRRHSGRPGGMKI 61
Query: 177 PFHFRAPSK-ILWKTVRGMIPHKTERGRML 263
+ ++ K L ++GM+P K +GR L
Sbjct: 62 RYFYQIGGKRALEHAIKGMLP-KGVKGRQL 90
>UniRef50_A4RYI1 Cluster: Plastid ribosomal protein L13 large
ribosomal subunit; n=2; Ostreococcus|Rep: Plastid
ribosomal protein L13 large ribosomal subunit -
Ostreococcus lucimarinus CCE9901
Length = 218
Score = 34.3 bits (75), Expect = 2.4
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Frame = +3
Query: 6 GHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKLMSFLRK 149
G LGRL+ V A L GN VVV+ ++I ++GN KL +R
Sbjct: 81 GLRLGRLSTVAATYLRGGNSGCYTPAFNMGVNVVVINADKIVVTGNKANQKLYYTLGVRG 140
Query: 150 R--CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGR 257
+ H R P++++ K ++GM+P K GR
Sbjct: 141 KPGSMKEETYASLHARQPARVIEKAIKGMLP-KNRMGR 177
>UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 106
Score = 33.5 bits (73), Expect = 4.2
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -1
Query: 190 LKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTLFPSRR 47
L+W+ R+G + + + +S S F+KK+P + SQ T+ P RR
Sbjct: 23 LEWRACRSGESPYKFQSLSVSRSKFIKKVPSGRVISQSTSAFWLPFRR 70
>UniRef50_Q9TLV3 Cluster: Putative uncharacterized protein rpl13;
n=1; Cyanidium caldarium|Rep: Putative uncharacterized
protein rpl13 - Cyanidium caldarium
Length = 143
Score = 33.5 bits (73), Expect = 4.2
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +3
Query: 12 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF- 188
L+G+ + + + N V+++ Q+ I+GN +N K+ + +H
Sbjct: 37 LMGKNRSTYSYNSMSANFVIIINSRQVAITGN--KNTQKVYKRYSAKPGATKTESFYHLK 94
Query: 189 -RAPSKILWKTVRGMIP 236
R P++IL + V+GM+P
Sbjct: 95 KRIPNRILEQAVKGMLP 111
>UniRef50_Q855Z2 Cluster: Gp80; n=1; Mycobacterium phage
Barnyard|Rep: Gp80 - Mycobacterium phage Barnyard
Length = 1111
Score = 33.5 bits (73), Expect = 4.2
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Frame = +2
Query: 356 KPGRNYCHVG-----RLSHEI--GWKYRDVVRKLEDKRKGKAVKRVAYEKKL 490
KP R C G +LS EI GWKYR R +RK + VKR+ YE K+
Sbjct: 296 KPLRFVCDKGLTAKQQLSREIAKGWKYRVAQRPDMARRKAEYVKRLQYEFKI 347
>UniRef50_A2AX70 Cluster: Gustatory receptor candidate 8; n=1;
Tribolium castaneum|Rep: Gustatory receptor candidate 8
- Tribolium castaneum (Red flour beetle)
Length = 379
Score = 33.5 bits (73), Expect = 4.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 105 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP--SKILWKTVRGMI 233
N+ + ++ +SF K CN+ P+ F P K LWK ++G++
Sbjct: 5 NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWKKIQGVV 49
>UniRef50_Q0UH25 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1156
Score = 33.5 bits (73), Expect = 4.2
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 410 KYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVRRCPKATTPFTTI 553
K + VV+ L D K K+ +E+ KR+T +L RRCP T F ++
Sbjct: 533 KLQSVVQVLNDASAVKPSKQ--WERSRKRLTNELSRRCPPIKTVFLSL 578
>UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal
protein L13a; n=2; Bos taurus|Rep: PREDICTED: similar to
ribosomal protein L13a - Bos taurus
Length = 112
Score = 33.1 bits (72), Expect = 5.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 132 MSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGRMLL 266
+ + + NP+ GPF F P I TV+ ++P+K + + L
Sbjct: 6 LDLFHRPLDTNPSNGPFQFWVPKHIFRHTVQDLLPYKIKHDQETL 50
>UniRef50_Q54I73 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1471
Score = 32.3 bits (70), Expect = 9.8
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 15 LGRLAAVIAKVLLEGNKVVVVRCE-QINISGNFFRNKLKLMSFLRKRCNVN 164
L LA +I VL+E N R E +I +S F N+ K +S RKR N N
Sbjct: 991 LDSLALIIGSVLIEAN--TCERSEFEIKVSSKAFENQFKYISEQRKRINDN 1039
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,077,078
Number of Sequences: 1657284
Number of extensions: 13692388
Number of successful extensions: 36880
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 35564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36846
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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