Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0745.Seq
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    33   0.001
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    33   0.001
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    24   1.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   1.2  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    23   2.1  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    23   2.1  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    23   2.1  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 105 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP--SKILWKTVRGMI 233
           N+ +  ++ +SF  K CN+     P+ F  P   K LWK ++G++
Sbjct: 5   NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWKKIQGVV 49


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 105 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP--SKILWKTVRGMI 233
           N+ +  ++ +SF  K CN+     P+ F  P   K LWK ++G++
Sbjct: 5   NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWKKIQGVV 49


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 288 PSYVRSLLRAFCHALFCVG 232
           P+Y+R+    FC  + C+G
Sbjct: 64  PNYIRTTSMVFCIIIMCLG 82


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 288 PSYVRSLLRAFCHALFCVG 232
           P+Y+R+    FC  + C+G
Sbjct: 64  PNYIRTTSMVFCIIIMCLG 82


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = -1

Query: 601 IFXYNFXVLIVSIGLDDGSEWCCRLRTPSHQILGDPLKFLFIGNSLNSLALPLVFKLTNN 422
           ++ Y F V+   + +  G E    L   S  +    L  L I  SL  L L +VF LT +
Sbjct: 89  LYAYVFYVVTTVLVVLVGYERFDILLNKSKNLQFPLLSTLIIIISLGCLILAVVFLLTLS 148

Query: 421 ITVFPSNFMGQSAYMTVIT 365
             +        +AY+ +IT
Sbjct: 149 ALLEGFTLYHTTAYLHIIT 167


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = -1

Query: 601 IFXYNFXVLIVSIGLDDGSEWCCRLRTPSHQILGDPLKFLFIGNSLNSLALPLVFKLTNN 422
           ++ Y F V+   + +  G E    L   S  +    L  L I  SL  L L +VF LT +
Sbjct: 89  LYAYVFYVVTTVLVVLVGYERFDILLNKSKNLQFPLLSTLIIIISLGCLILAVVFLLTLS 148

Query: 421 ITVFPSNFMGQSAYMTVIT 365
             +        +AY+ +IT
Sbjct: 149 ALLEGFTLYHTTAYLHIIT 167


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = -1

Query: 601 IFXYNFXVLIVSIGLDDGSEWCCRLRTPSHQILGDPLKFLFIGNSLNSLALPLVFKLTNN 422
           ++ Y F V+   + +  G E    L   S  +    L  L I  SL  L L +VF LT +
Sbjct: 89  LYAYVFYVVTTVLVVLVGYERFDILLNKSKNLQFPLLSTLIIIISLGCLILAVVFLLTLS 148

Query: 421 ITVFPSNFMGQSAYMTVIT 365
             +        +AY+ +IT
Sbjct: 149 ALLEGFTLYHTTAYLHIIT 167


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,460
Number of Sequences: 336
Number of extensions: 3506
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)