Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0745.Seq
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 126 1e-29
07_01_0071 - 522920-523063,524125-524212,524289-524677 124 6e-29
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 64 9e-11
11_04_0056 + 12942802-12942920,12943022-12943115 54 7e-08
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 32 0.43
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 31 0.57
04_03_0232 - 13049649-13052807 31 0.75
05_03_0238 - 10783451-10783735,10784686-10785762 29 4.0
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 28 5.3
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 7.0
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 27 9.2
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 126 bits (305), Expect = 1e-29
Identities = 56/88 (63%), Positives = 69/88 (78%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K + FLRKR N P+ GP
Sbjct: 17 RHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPI 76
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
HFR+P+KILW+TVRGMIPHKT+RG L
Sbjct: 77 HFRSPAKILWRTVRGMIPHKTKRGEAAL 104
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/91 (40%), Positives = 56/91 (61%)
Frame = +2
Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
P + + + AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW
Sbjct: 94 PHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWN 153
Query: 413 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 505
Y D +R+LE+KRK KA +VAY+++ K++ K
Sbjct: 154 YYDTIRELEEKRKEKA--KVAYDRR-KQLAK 181
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 124 bits (299), Expect = 6e-29
Identities = 55/88 (62%), Positives = 67/88 (76%)
Frame = +3
Query: 3 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K + FLRKR N P+ GP
Sbjct: 17 RHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPI 76
Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
HFRAPS+I W+TVRGMIPHKT RG L
Sbjct: 77 HFRAPSRIFWRTVRGMIPHKTPRGEAAL 104
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/91 (40%), Positives = 55/91 (60%)
Frame = +2
Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
P + + AL L+ +DG PPP+D L+PG YC +G+LS E+GW
Sbjct: 94 PHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDALKVLRLQPGHKYCLLGQLSKEVGWN 153
Query: 413 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 505
Y D +R+LE+KRK KA +VAYE++ K++T+
Sbjct: 154 YHDTIRELEEKRKEKA--KVAYERR-KQLTR 181
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 64.1 bits (149), Expect = 9e-11
Identities = 25/37 (67%), Positives = 30/37 (81%)
Frame = +3
Query: 156 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGRMLL 266
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG L
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAAL 38
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +2
Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
P + + + AL RL+ Y+ PP+D L+PG YC +G+LS E+GW
Sbjct: 28 PHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWN 87
Query: 413 YRDVVR 430
Y D +R
Sbjct: 88 YYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 54.4 bits (125), Expect = 7e-08
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = +2
Query: 260 ALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 415
AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 13 ALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 31.9 bits (69), Expect = 0.43
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +1
Query: 31 QSSPRSFSKGTKLLWFAANKSISLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFY 210
Q+SP + +L WF N ++S LG C + T +DLS L + Y
Sbjct: 567 QNSPTDNTSSERLQWFRENSTVS---ELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLY 623
Query: 211 GRL*EV 228
GRL E+
Sbjct: 624 GRLSEM 629
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 31.5 bits (68), Expect = 0.57
Identities = 26/85 (30%), Positives = 35/85 (41%)
Frame = +3
Query: 9 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 188
H+ G+ A + G VVVV E++ +SG KL R
Sbjct: 559 HIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRRHSGRPGGMKEETFDQLQK 618
Query: 189 RAPSKILWKTVRGMIPHKTERGRML 263
R P +I+ VRGM+P K GR L
Sbjct: 619 RIPERIIEHAVRGMLP-KGRLGRRL 642
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 458 PCPSSCLQAYEQHHGISIQFHGTVCLH 378
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>05_03_0238 - 10783451-10783735,10784686-10785762
Length = 453
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 386 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDL 511
+L +EI RD+ ++ EDK +K A E K ++ K L
Sbjct: 177 KLGNEIDKTRRDITKQFEDKGNKLEIKMKALEGKTDKLDKSL 218
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 377 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY-EKKLKRITKDLVR 517
H G E G +VVR L D +GKAV+R+ +++L+ + + L R
Sbjct: 165 HGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLRHLPEQLGR 212
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 27 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 137
A A ++ + VVVV CE+ I+G N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 23 SGGSHRQGPSRREQSCCGSLRTNQYL 100
SGG HR+ SRR G L TN+ L
Sbjct: 270 SGGEHRRKTSRRRSLIIGWLTTNKQL 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,455,082
Number of Sequences: 37544
Number of extensions: 399830
Number of successful extensions: 1048
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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