Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0745.Seq
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)                 29   4.1  
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)                 29   4.1  
SB_7453| Best HMM Match : Microcin (HMM E-Value=2)                     29   4.1  
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)              29   4.1  
SB_40065| Best HMM Match : ABC_tran (HMM E-Value=0.0055)               28   7.1  
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             28   7.1  
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)           28   7.1  
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 27   9.4  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 233 PTQNRAWQNALRRLRTYDGCPPPFD 307
           P + +    A+ R++ +DG PPP+D
Sbjct: 3   PHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +3

Query: 57  GNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIP 236
           G+ VVV+  + I +SG  + NKL                   H +  ++ILW+ V GM+P
Sbjct: 54  GDYVVVINTKHIVLSGTKWDNKLYRHHTGYPGGLKEILAKDLHRKDGTRILWRAVNGMLP 113

Query: 237 HKTER 251
               R
Sbjct: 114 KNNLR 118


>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
          Length = 622

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 359 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 475
           PG   C VG+L H   W    + R L   R+  + ++ A
Sbjct: 407 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 445


>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
          Length = 1266

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 359 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 475
           PG   C VG+L H   W    + R L   R+  + ++ A
Sbjct: 866 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 904


>SB_7453| Best HMM Match : Microcin (HMM E-Value=2)
          Length = 158

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 350 CLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVRRC 523
           C++ G N   +G+   E G K       L DK     V     EKK K + + +V++C
Sbjct: 85  CIETGVNKKVIGKFKDEAGGKQITEFVGLRDKLYAFEVDGGREEKKCKGVKRAVVKKC 142


>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
          Length = 225

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 172 RAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTL 62
           R G+   + + ++ ++ LFL   PE++    R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167


>SB_40065| Best HMM Match : ABC_tran (HMM E-Value=0.0055)
          Length = 400

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 502 QGSGEKVSEGDNTIHYHHPILWIQL 576
           +GS + VS  DN  HYH   LWI L
Sbjct: 146 KGSSD-VSNQDNAEHYHWSALWIDL 169


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +1

Query: 1   AVVICWAVWRQSSPRSFSKGTKLLWFAANKSISLA 105
           +V +C ++W  + P  F    +L+W+  + S+S++
Sbjct: 267 SVSLCQSIWYHTHPSVFVSLGQLIWYNTHPSVSVS 301


>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
          Length = 676

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 383 LHDSNYGQVSDRRHVEQQALQHVDGYQREEGTH-HMY 276
           +H S + +V  ++H+E +A  H   Y R +  H H+Y
Sbjct: 319 IHVSVFRRVLHQKHIEVEAYNHPHVYSRVKSNHPHVY 355


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 211 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTT 68
           H +   AL+W+G R  FTL +   + + LS  + K  + + C   ++T
Sbjct: 530 HEVWYQALRWRGERVYFTLIMPWMSRVPLSQPIPKRSDRVSCGALSST 577


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,833,594
Number of Sequences: 59808
Number of extensions: 448058
Number of successful extensions: 1831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)