Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0745.Seq
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   141   4e-34
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   141   4e-34
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    30   1.6  
U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    29   2.1  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z81550-7|CAH60764.1|  581|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z81550-6|CAB04481.3|  578|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z70211-6|CAH60769.1|  581|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z70211-5|CAA94160.3|  578|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    27   8.3  
AL033514-25|CAA22109.1|  570|Caenorhabditis elegans Hypothetical...    27   8.3  
AF273825-1|AAG15174.1|  579|Caenorhabditis elegans nuclear recep...    27   8.3  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  141 bits (341), Expect = 4e-34
 Identities = 62/88 (70%), Positives = 75/88 (85%)
 Frame = +3

Query: 3   RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
           + HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRKRCN+NPARG F
Sbjct: 13  KNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAF 72

Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
           H+RAP KI W+TVRGM+PHKT RG   L
Sbjct: 73  HYRAPGKIFWRTVRGMLPHKTNRGNEAL 100



 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 39/114 (34%), Positives = 57/114 (50%)
 Frame = +2

Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
           P +      AL+ LR Y+G P  +              F L+P R +C VGRLSHE+GW+
Sbjct: 90  PHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQ 148

Query: 413 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVRRCPKATTPFTTIIQSYGYN 574
           ++DVV KLE KRK K       +KK+ ++     +        +  II++ GYN
Sbjct: 149 FQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGYN 202


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  141 bits (341), Expect = 4e-34
 Identities = 62/88 (70%), Positives = 75/88 (85%)
 Frame = +3

Query: 3   RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
           + HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRKRCN+NPARG F
Sbjct: 13  KNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAF 72

Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
           H+RAP KI W+TVRGM+PHKT RG   L
Sbjct: 73  HYRAPGKIFWRTVRGMLPHKTNRGNEAL 100



 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 39/114 (34%), Positives = 57/114 (50%)
 Frame = +2

Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
           P +      AL+ LR Y+G P  +              F L+P R +C VGRLSHE+GW+
Sbjct: 90  PHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQ 148

Query: 413 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVRRCPKATTPFTTIIQSYGYN 574
           ++DVV KLE KRK K       +KK+ ++     +        +  II++ GYN
Sbjct: 149 FQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGYN 202


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
           protein T04G9.1 protein.
          Length = 1610

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 206 SMEDCKRYDPTQNR-AWQNALRRLRTYDGCPPP 301
           +M +  R+ PT  R A  N LR+ R  DGCP P
Sbjct: 402 AMAEFTRHTPTGTRSATPNILRKNRNTDGCPSP 434


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 476 RQLS*QPCPSSCLQAYEQHHGISIQFHGTVCLHDSNY 366
           R+ S   C S  L  +E HHGI +   G + L D++Y
Sbjct: 322 RKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358


>U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical
           protein C10G8.3 protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 458 PCPSSCLQAYEQHHGISIQFHGTVCLHD 375
           PCP       E+ HGI++Q  G  CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 368 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGKAVK-RVAYEKKLKRITKDLVRR 520
           +YC  G+ S  H I WKYRD V  ++ K K  A++ R A E K   I  D+ ++
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHDVEQK 335


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = -3

Query: 422 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 255
           HH      H     H   +G V  R H E     H   +  E GTHH +     H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435


>Z81550-7|CAH60764.1|  581|Caenorhabditis elegans Hypothetical
           protein K11E4.5b protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 212 EDCKRYDPTQNRAWQNALR 268
           E C+ + PT NR W+N +R
Sbjct: 329 EHCRTFAPTFNRFWKNVIR 347


>Z81550-6|CAB04481.3|  578|Caenorhabditis elegans Hypothetical
           protein K11E4.5a protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 212 EDCKRYDPTQNRAWQNALR 268
           E C+ + PT NR W+N +R
Sbjct: 326 EHCRTFAPTFNRFWKNVIR 344


>Z70211-6|CAH60769.1|  581|Caenorhabditis elegans Hypothetical
           protein K11E4.5b protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 212 EDCKRYDPTQNRAWQNALR 268
           E C+ + PT NR W+N +R
Sbjct: 329 EHCRTFAPTFNRFWKNVIR 347


>Z70211-5|CAA94160.3|  578|Caenorhabditis elegans Hypothetical
           protein K11E4.5a protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 212 EDCKRYDPTQNRAWQNALR 268
           E C+ + PT NR W+N +R
Sbjct: 326 EHCRTFAPTFNRFWKNVIR 344


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 433 LTNNITVFPSNFMGQSAYMTVITARFQTE 347
           L NNI VFPSN + +++ MT+   R +T+
Sbjct: 27  LENNILVFPSN-ISEASGMTLFHGRIETK 54


>AL033514-25|CAA22109.1|  570|Caenorhabditis elegans Hypothetical
           protein Y75B8A.25 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 389 LSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVR 517
           L  ++   ++D V + ED  + KA++R  + +K  +  +DLV+
Sbjct: 35  LDEKLDRDFQDSVTRKEDYMREKAIRRQKHSEKFDKKFEDLVK 77


>AF273825-1|AAG15174.1|  579|Caenorhabditis elegans nuclear receptor
           NHR-71 protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 212 EDCKRYDPTQNRAWQNALR 268
           E C+ + PT NR W+N +R
Sbjct: 327 EHCRTFAPTFNRFWKNVIR 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,153,875
Number of Sequences: 27780
Number of extensions: 324322
Number of successful extensions: 864
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)