Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0745.Seq
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)         127   5e-30
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si...   126   9e-30
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si...   126   2e-29
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri...   124   6e-29
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR...    32   0.27 
At5g08720.1 68418.m01036 expressed protein                             30   1.4  
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si...    30   1.4  
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t...    29   2.5  
At5g19400.1 68418.m02312 expressed protein                             28   4.4  
At4g35040.1 68417.m04972 bZIP transcription factor family protei...    28   4.4  

>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
          Length = 206

 Score =  127 bits (307), Expect = 5e-30
 Identities = 57/88 (64%), Positives = 67/88 (76%)
 Frame = +3

Query: 3   RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
           R H+LGRLA++ AK LL G KVV+VRCE+I +SG   R K+K M FLRKR N  P+ GP 
Sbjct: 17  RHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPI 76

Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
           HFRAPSKI W+TVRGMIPHKT+RG   L
Sbjct: 77  HFRAPSKIFWRTVRGMIPHKTKRGAAAL 104



 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 34/91 (37%), Positives = 50/91 (54%)
 Frame = +2

Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
           P + +    AL RL+ Y+G P P+D               L+ G  YC +GRLS E+GW 
Sbjct: 94  PHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWN 153

Query: 413 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 505
           + D +++LE KRK +A   V YE+K K++ K
Sbjct: 154 HYDTIKELETKRKERA--HVVYERK-KQLNK 181


>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
           similar to ribosomal protein L13A GB:O49885 [Lupinus
           luteus]
          Length = 206

 Score =  126 bits (305), Expect = 9e-30
 Identities = 56/84 (66%), Positives = 66/84 (78%)
 Frame = +3

Query: 3   RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
           R H+LGRLA+V+AK LL G  +VVVRCE+I +SG   R K+K M FLRKR N  P+ GP 
Sbjct: 17  RHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPI 76

Query: 183 HFRAPSKILWKTVRGMIPHKTERG 254
           HFRAPSKI W+TVRGMIPHKT+RG
Sbjct: 77  HFRAPSKIFWRTVRGMIPHKTKRG 100



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 33/91 (36%), Positives = 53/91 (58%)
 Frame = +2

Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
           P + +   NAL RL+ ++G P P+D               L+ G  YC +GRLS E+GW 
Sbjct: 94  PHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWN 153

Query: 413 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 505
           + D +++LE+KRK +A  +  YE+K K+++K
Sbjct: 154 HYDTIKELENKRKERA--QAVYERK-KQLSK 181


>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
           similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
           [Rattus norvegicus]
          Length = 206

 Score =  126 bits (303), Expect = 2e-29
 Identities = 57/88 (64%), Positives = 66/88 (75%)
 Frame = +3

Query: 3   RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
           R H+ GRLA++IAK LL G  VVVVRCE+I +SG   R K+K M FLRKR N  P+ GP 
Sbjct: 17  RHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPI 76

Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
           HFRAPSKI W+TVRGMIPHKT+RG   L
Sbjct: 77  HFRAPSKIFWRTVRGMIPHKTKRGAAAL 104



 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 33/91 (36%), Positives = 52/91 (57%)
 Frame = +2

Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
           P + +    AL RL+ ++G PPP+D               L+ G  YC +GRLS E+GW 
Sbjct: 94  PHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWN 153

Query: 413 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 505
           + D +++LE KRK ++  +  YE+K K++TK
Sbjct: 154 HYDTIKELEVKRKERS--QALYERK-KQLTK 181


>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
           ribosomal protein L13a -Lupinus luteus,PID:e1237871
          Length = 206

 Score =  124 bits (298), Expect = 6e-29
 Identities = 57/88 (64%), Positives = 66/88 (75%)
 Frame = +3

Query: 3   RGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPF 182
           R H+LGRLA+  AK LL G +VVVVRCE+I +SG   R K+K M FLRKR N  P+ GP 
Sbjct: 17  RHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPI 76

Query: 183 HFRAPSKILWKTVRGMIPHKTERGRMLL 266
           HFRAPSKI W+TVRGMIPHKT+RG   L
Sbjct: 77  HFRAPSKIFWRTVRGMIPHKTKRGAAAL 104



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 33/91 (36%), Positives = 52/91 (57%)
 Frame = +2

Query: 233 PTQNRAWQNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 412
           P + +    AL RL+ ++G PPP+D               L+ G  YC +GRLS E+GW 
Sbjct: 94  PHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWN 153

Query: 413 YRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 505
           + D +++LE KRK ++  +V YE+K K++ K
Sbjct: 154 HYDTIKELETKRKERS--QVMYERK-KQLNK 181


>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1189

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = -1

Query: 268 PKSILPRSVLCG-IIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEI 95
           P + LP +V    +I L + H  LD  + W+G +    LH LR+ D+S S+ LK+LP++
Sbjct: 642 PMTCLPSTVNVEFLIELNLTHSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695


>At5g08720.1 68418.m01036 expressed protein
          Length = 719

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -3

Query: 341 VEQQALQHVDGYQREEGTHHMYVAS*EHSATLCFVWD-HTSY-SLP---*NLRWSSKMER 177
           V++  L+  DG     G H   VAS    A +C VW   TSY SLP    NL  S  + R
Sbjct: 316 VDEVHLRRFDGLLENGGVHRCAVASITVKAPVCEVWKVLTSYESLPEIVPNLAISKILSR 375

Query: 176 STSRIHV 156
             +++ +
Sbjct: 376 DNNKVRI 382


>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
           similar to ribosomal protein L13 GI:170132 from
           [Spinacia oleracea]
          Length = 241

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/85 (29%), Positives = 35/85 (41%)
 Frame = +3

Query: 9   HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 188
           H+ G+  A     +  G  V+VV  E++ +SG     KL      R              
Sbjct: 125 HIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQ 184

Query: 189 RAPSKILWKTVRGMIPHKTERGRML 263
           R P +I+   VRGM+P K   GR L
Sbjct: 185 RIPERIVEHAVRGMLP-KGRLGRAL 208


>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
           DNA-binding protein [Triticum aestivum] GI:6958202;
           contains Pfam profile: PF01535 PPR repeat
          Length = 610

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 72  VVRCEQINISGNFF-RNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGM 230
           V  C Q+ +  +   R K+  +  L +R N+ P+R  +HF   SK L   + GM
Sbjct: 277 VFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGM 330


>At5g19400.1 68418.m02312 expressed protein
          Length = 1093

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -1

Query: 505  LGDPLKFLFIGNSLNSLALPLVFKLTNNITVFPSNFMGQSAYMTVITARFQTEDT*SSRH 326
            L  P  F F G  + +  +   F    N      NF+ ++   T +  ++Q + T SSRH
Sbjct: 1000 LNGPANFPFPGKQVPTSQVQADFPYFQNPQ--KDNFVDKNHQSTQLPEQYQGQSTWSSRH 1057

Query: 325  YNTSTV 308
            ++T+ V
Sbjct: 1058 FDTAHV 1063


>At4g35040.1 68417.m04972 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 261

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 416 RDVVRKLEDKRKGKAVKRVAYEKKLKRITKDLVRRCPKATT 538
           R+ VRK  +K+K KA        +L+ + + LV+R     T
Sbjct: 100 REAVRKYREKKKAKAASLEDEVARLRAVNQQLVKRLQNQAT 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,531,070
Number of Sequences: 28952
Number of extensions: 309751
Number of successful extensions: 894
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)